4k75

CFTR Associated Ligand (CAL) PDZ domain bound to peptide iCAL36-QDTRL (ANSRWQDTRL)

Method: X-RAY DIFFRACTION Dmax: 44.2 Å Quality: REASONABLE

1. Protein Identity and Related Structures Protein Identity & Related Structures

Golgi-associated PDZ and coiled-coil motif-containing protein

Homo sapiens

UniProt Q9HD26

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain A; UniProt 284–370 Fragment:PDZ domain Non-standard monomer:Yes (specific site not provided by mmCIF) iCAL36-QDTRL peptide × 1 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 8;291 K;40% (w/v) polyethylene glycol (PEG) 1000, 0.09 M sodium thiosulfate pentahydrate, 0.1 M tris(hydroxymethyl)aminomethane (Tris), pH 8.0, VAPOR DIFFUSION, HANGING DROP, temperature 291K Resolution 1.50 Å R-free 0.221

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

34 other PDB entries and 64 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name GOPC_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–87; UniProt 284–370

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 4k75

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 4k75
Download Download

2. Structure Basics 2. Structure Basics

Entry ID entry_id4k75
Deposition date deposition_date2013-04-16
Structure title titleCFTR Associated Ligand (CAL) PDZ domain bound to peptide iCAL36-QDTRL (ANSRWQDTRL)
Keywords keywordsPDZ domain, CAL, PIST, FIG, PDZ-peptide complex, CFTR Associated Ligand, CFTR, PEPTIDE BINDING PROTEIN-PROTEIN BINDING complex; PEPTIDE BINDING PROTEIN/PROTEIN BINDING
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier13.83
Radius of gyration Rg (electron density) rg_electron12.31
Forward intensity I(0) i02325290.00
Molecular weight molecular_weight10376.0 kDa
Excluded volume excluded_volume12971 ų
Envelope volume envelope_volume14100 ų
Hydration-shell volume shell_volume9940 ų
Envelope diameter envelope_diameter42.6
Shell Rg shell_rg17.87
Envelope Rg envelope_rg12.58
Shape Rg shape_rg12.30
Total Rg total_rg13.63
Total atoms total_atoms730
Residues n_residues93
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax44.2
Rg (real space) rg_real13.73
Rg uncertainty (real space) rg_real_error0.23
I(0) (real space) i0_real2.3250e+06
I(0) uncertainty (real space) i0_real_error2.4710e+04
Rg (reciprocal space) rg_reciprocal13.74
I(0) (reciprocal space) i0_reciprocal2325000.0000
Solution quality estimate total_estimate0.6636
Solution quality rating solution_quality REASONABLE a REASONABLE solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary18.5
Skewness Skewness skewness0.106
Kurtosis Kurtosis kurtosis-0.325
Angular range angular_range— – 0.5000 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha277800.0000
Real-space data points n_real_points80
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.841; Stabil: 1.000; Sysdev: 0.368; Positv: 1.000; Valcen: 0.996; Smooth: 0.000

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (3)

7. Fold Classification (SCOP + CATH) 2 domains

SCOP 2.08 (1 domains)

Domain ID domain_idd4k75a_
Class classb — All beta proteins
Fold Fold foldb.36 — PDZ domain-like
Superfamily Superfamily superfamilyb.36.1 — PDZ domain-like
Family Family familyb.36.1.0 — automated matches

CATH v4.4 (1 domains)

Domain ID domain_id4k75A00
Class class2 — Mainly Beta
Architecture architecture30 — Roll
Topology topology42 — Pdz3 Domain
Homologous superfamily homologous superfamily10 — PDZ domain

8. Citations (1)

9. Files and Curves (10)