4lpz

ARNT transcription factor/coactivator complex

Method: X-RAY DIFFRACTION Dmax: 89.8 Å Quality: REASONABLE

1. Protein Identity and Related Structures Protein Identity & Related Structures

Aryl hydrocarbon receptor nuclear translocator

Homo sapiens

UniProt P27540

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 4 PDB declaration: tetrameric(4) Consistent with protein copy count Chain A; UniProt 356–470 Chain B; UniProt 356–470 Fragment:PAS 2 and PAC domain residues 356-470 Transforming acidic coiled-coil-containing protein 3 × 2 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 6.5;293 K;1M Succinic acid, 30% w/v D-Sorbitol, pH 6.5, VAPOR DIFFUSION, HANGING DROP, temperature 293K Resolution 3.15 Å R-free 0.272

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

42 other PDB entries and 48 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name ARNT_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 5–119; UniProt 356–470 Author chain B; PDBConstruct 5–119; UniProt 356–470

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 4lpz

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 4lpz
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2. Structure Basics 2. Structure Basics

Entry ID entry_id4lpz
Deposition date deposition_date2013-07-16
Structure title titleARNT transcription factor/coactivator complex
Keywords keywordsPAS domain coiled coil, transcription; TRANSCRIPTION
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier22.90
Radius of gyration Rg (electron density) rg_electron22.80
Forward intensity I(0) i015241400.00
Molecular weight molecular_weight29962.0 kDa
Excluded volume excluded_volume37716 ų
Envelope volume envelope_volume45567 ų
Hydration-shell volume shell_volume18482 ų
Envelope diameter envelope_diameter92.7
Shell Rg shell_rg27.14
Envelope Rg envelope_rg23.51
Shape Rg shape_rg22.79
Total Rg total_rg23.41
Total atoms total_atoms2108
Residues n_residues255
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax89.8
Rg (real space) rg_real23.23
Rg uncertainty (real space) rg_real_error1.06
I(0) (real space) i0_real1.5240e+07
I(0) uncertainty (real space) i0_real_error2.1580e+05
Rg (reciprocal space) rg_reciprocal23.15
I(0) (reciprocal space) i0_reciprocal15240000.0000
Solution quality estimate total_estimate0.7373
Solution quality rating solution_quality REASONABLE a REASONABLE solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary20.7
Skewness Skewness skewness0.769
Kurtosis Kurtosis kurtosis0.432
Angular range angular_range— – 0.3450 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha6462000.0000
Real-space data points n_real_points66
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.409; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.366; Smooth: 0.987

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (2)

7. Fold Classification (SCOP + CATH) 4 domains

SCOP 2.08 (2 domains)

Domain ID domain_idd4lpza_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.110 — Profilin-like
Superfamily Superfamily superfamilyd.110.3 — PYP-like sensor domain (PAS domain)
Family Family familyd.110.3.0 — automated matches
Domain ID domain_idd4lpzb_
Class classd — Alpha and beta proteins (a+b)
Fold Fold foldd.110 — Profilin-like
Superfamily Superfamily superfamilyd.110.3 — PYP-like sensor domain (PAS domain)
Family Family familyd.110.3.0 — automated matches

CATH v4.4 (2 domains)

Domain ID domain_id4lpzA00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology450 — Beta-Lactamase
Homologous superfamily homologous superfamily20 — PAS domain
Domain ID domain_id4lpzB00
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology450 — Beta-Lactamase
Homologous superfamily homologous superfamily20 — PAS domain

8. Citations (1)

9. Files and Curves (10)