4u12

Crystal structure of protein HP0242 from Helicobacter pylori at 1.94 A resolution: a knotted homodimer

Method: X-RAY DIFFRACTION
▼

1. Protein Identity and Related Structures Protein Identity & Related Structures

Uncharacterized protein HP0242

Helicobacter pylori 26695

UniProt O25025

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein homooligomer Homooligomer Protein 2 water × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name O25025_HELPY
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–94; UniProt 1–94

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

▼

2. Structure Basics 2. Structure Basics

Entry ID entry_id4u12
Deposition date deposition_date2014-07-14
Structure title titleCrystal structure of protein HP0242 from Helicobacter pylori at 1.94 A resolution: a knotted homodimer
Keywords keywords;Structural Genomics, PSI-2, Midwest Center for Structural Genomics, MCSG, Knotted homodimer, HELICOBACTER PYLORI, UNKNOWN FUNCTION, Protein Structure Initiative ;; Structural Genomics, Unknown Function
Experimental Method methodX-RAY DIFFRACTION
▼

3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

4u12__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

4u12__assembly_1__model_1 | I(q)

10-2 10-1 105 106 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

4u12__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)17.11 Å
Rg (electron density)15.62 Å
Total Rg16.69 Å
Atom count1252
Residues158
Excluded volume22492 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 4u12__assembly_1__model_1 dimeric (2) Success 4.1.3-1-20251215 (887e7ef) View Download
▶

4. Crystallography and Experiment 4. Crystallography & Experiment

▶

5. Entities and Polymers Entities & Polymers (2)

▼

6. Fold Classification (SCOP + CATH) 2 domains

SCOP 2.08 (1 domains)

Domain ID domain_idd4u12a_
Class classa — All alpha proteins
Fold Fold folda.292 — HP0242-like
Superfamily Superfamily superfamilya.292.1 — HP0242-like
Family Family familya.292.1.1 — HP0242-like

CATH v4.4 (1 domains)

Domain ID domain_id4u12A00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3350 — HP0242-like fold
Homologous superfamily homologous superfamily10 — HP0242-like domain
▶

7. Citations (1)