4ujd

mammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

EIF5B

OrganismNot specified

UniProt G1TRL5

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 77 RNA 6 28S Ribosomal RNA × 1 5.8S Ribosomal RNA × 1 5S Ribosomal RNA × 1 60S RIBOSOMAL PROTEIN L8 × 1 60S RIBOSOMAL PROTEIN L3 × 1 60S RIBOSOMAL PROTEIN L4 × 1 60S RIBOSOMAL PROTEIN L5 × 1 60S RIBOSOMAL PROTEIN L6 × 1 60S RIBOSOMAL PROTEIN L7 × 1 60S RIBOSOMAL PROTEIN L7A × 1 60S RIBOSOMAL PROTEIN L9 × 1 60S RIBOSOMAL PROTEIN L10 × 1 60S RIBOSOMAL PROTEIN L11 × 1 60S RIBOSOMAL PROTEIN L13 × 1 60S RIBOSOMAL PROTEIN L14 × 1 60S RIBOSOMAL PROTEIN L15 × 1 60S RIBOSOMAL PROTEIN L13A × 1 60S RIBOSOMAL PROTEIN L17 × 1 60S RIBOSOMAL PROTEIN L18 × 1 60S RIBOSOMAL PROTEIN L19 × 1 60S RIBOSOMAL PROTEIN L18A × 1 60S RIBOSOMAL PROTEIN L21 × 1 60S RIBOSOMAL PROTEIN L22 × 1 60S RIBOSOMAL PROTEIN L23 × 1 60S RIBOSOMAL PROTEIN L24 × 1 60S RIBOSOMAL PROTEIN L23A × 1 60S RIBOSOMAL PROTEIN L26 × 1 60S RIBOSOMAL PROTEIN L27 × 1 60S RIBOSOMAL PROTEIN L27A × 1 60S RIBOSOMAL PROTEIN L29 × 1 60S RIBOSOMAL PROTEIN L30 × 1 60S RIBOSOMAL PROTEIN L31 × 1 60S RIBOSOMAL PROTEIN L32 × 1 60S RIBOSOMAL PROTEIN L35A × 1 60S RIBOSOMAL PROTEIN L34 × 1 60S RIBOSOMAL PROTEIN L35 × 1 60S RIBOSOMAL PROTEIN L36 × 1 60S RIBOSOMAL PROTEIN L37 × 1 60S RIBOSOMAL PROTEIN L38 × 1 60S RIBOSOMAL PROTEIN L39 × 1 UBIQUITIN-60S RIBOSOMAL PROTEIN L40 × 1 60S RIBOSOMAL PROTEIN L41 × 1 60S RIBOSOMAL PROTEIN L36A × 1 60S RIBOSOMAL PROTEIN L37A × 1 60S RIBOSOMAL PROTEIN L28 × 1 60S RIBOSOMAL PROTEIN L10A × 1 TRNA × 1 HCV-IRES × 1 18S Ribosomal RNA × 1 40S RIBOSOMAL PROTEIN US2 × 1 40S RIBOSOMAL PROTEIN ES1 × 1 40S RIBOSOMAL PROTEIN US5 × 1 40S RIBOSOMAL PROTEIN US3 × 1 40S RIBOSOMAL PROTEIN ES4 × 1 40S RIBOSOMAL PROTEIN US7 × 1 40S RIBOSOMAL PROTEIN ES6 × 1 40S RIBOSOMAL PROTEIN ES7 × 1 40S RIBOSOMAL PROTEIN ES8 × 1 40S RIBOSOMAL PROTEIN US4 × 1 40S RIBOSOMAL PROTEIN ES10 × 1 40S RIBOSOMAL PROTEIN US17 × 1 40S RIBOSOMAL PROTEIN ES12 × 1 40S RIBOSOMAL PROTEIN ES15 × 1 40S RIBOSOMAL PROTEIN ES11 × 1 40S RIBOSOMAL PROTEIN US19 × 1 40S RIBOSOMAL PROTEIN US9 × 1 40S RIBOSOMAL PROTEIN ES17 × 1 40S RIBOSOMAL PROTEIN US13 × 1 40S RIBOSOMAL PROTEIN ES19 × 1 40S RIBOSOMAL PROTEIN US10 × 1 40S RIBOSOMAL PROTEIN ES21 × 1 40S RIBOSOMAL PROTEIN US8 × 1 40S RIBOSOMAL PROTEIN US12 × 1 40S RIBOSOMAL PROTEIN ES24 × 1 40S RIBOSOMAL PROTEIN ES25 × 1 40S RIBOSOMAL PROTEIN ES26 × 1 40S RIBOSOMAL PROTEIN ES27 × 1 40S RIBOSOMAL PROTEIN ES28 × 1 40S RIBOSOMAL PROTEIN US14 × 1 40S RIBOSOMAL PROTEIN ES30 × 1 40S RIBOSOMAL PROTEIN ES31 × 1 40S RIBOSOMAL PROTEIN RACK1 × 1 PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER × 1 MAGNESIUM ION × 1 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name G1TRL5_RABIT
Isoform —
PDB entities 48
Chains and sequence ranges Author chain BB; PDBConstruct 1–627; UniProt 583–1209

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id4ujd
Deposition date deposition_date2014-06-18
Structure title titlemammalian 80S HCV-IRES initiation complex with eIF5B PRE-like state
Keywords keywordsRIBOSOME, TRANSLATION INITIATION, HEPATITIS C VIRUS INTERNAL RIBOSOME ENTRY SITE, EUKARYOTIC INITIATION FACTOR 5B; RIBOSOME
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

4ujd__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

4ujd__assembly_1__model_1 | I(q)

10-2 10-1 107 108 109 1010 1011 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

4ujd__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)96.36 Å
Rg (electron density)96.93 Å
Total Rg96.89 Å
Atom count223911
Residues17928
Excluded volume3531100 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 4ujd__assembly_1__model_1 83-meric (83) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (85)

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7. Citations (1)