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5cfy

CRYSTAL STRUCTURE OF GLTPH R397A IN COMPLEX WITH NA+ AND L-ASP

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

425aa long hypothetical proton glutamate symport protein

Pyrococcus horikoshii (strain ATCC 700860 / DSM 12428 / JCM 9974 / NBRC 100139 / OT-3)

UniProt O59010

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein homooligomer Homooligomer Protein 6 ASPARTIC ACID × 6 SODIUM ION × 12 water × 6 Consistent with protein count

Other States of the Same Protein in the Database

Monomer
6wyj 6wyk 7ug0 7ugd 7ugj 7ugv 7ugx 7uh3 7uh6 9bh1 9bh2

11 assemblies

Homodimer

None

Homotetramer

None

Other homooligomers
1xfh 2nwl 2nww 2nwx 3kbc 3v8f 3v8g 3v8g 4izm 4oye 4oye 4p19

29 assemblies; showing the first 12

Heteromeric or nucleic-acid complex

None

View Construct and Data Evidence
UniProt name O59010_PYRHO
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A； PDBConstruct 1–425； UniProt 1–425 Author chain B； PDBConstruct 1–425； UniProt 1–425 Author chain C； PDBConstruct 1–425； UniProt 1–425 Author chain D； PDBConstruct 1–425； UniProt 1–425 Author chain E； PDBConstruct 1–425； UniProt 1–425 Author chain F； PDBConstruct 1–425； UniProt 1–425

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id5cfy
Deposition date deposition_date2015-07-08
Structure title titleCRYSTAL STRUCTURE OF GLTPH R397A IN COMPLEX WITH NA+ AND L-ASP
Keywords keywordsASPARTATE TRANSPORTER, MEMBRANE PROTEIN, TRANSPORT PROTEIN; TRANSPORT PROTEIN
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

5cfy__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

5cfy__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

5cfy__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）44.04 Å
Rg (electron density)43.51 Å
Total Rg43.94 Å
Atom count18234
Residues2466
Excluded volume335760 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 5cfy__assembly_1__model_1 hexameric （6） Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (4)

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6. Fold Classification (SCOP + CATH) 6 domains

CATH v4.4 (6 domains)

Domain ID domain_id5cfyA00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3860 — Proton glutamate symport protein
Homologous superfamily homologous superfamily10 — Sodium:dicarboxylate symporter
Domain ID domain_id5cfyB00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3860 — Proton glutamate symport protein
Homologous superfamily homologous superfamily10 — Sodium:dicarboxylate symporter
Domain ID domain_id5cfyC00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3860 — Proton glutamate symport protein
Homologous superfamily homologous superfamily10 — Sodium:dicarboxylate symporter
Domain ID domain_id5cfyD00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3860 — Proton glutamate symport protein
Homologous superfamily homologous superfamily10 — Sodium:dicarboxylate symporter
Domain ID domain_id5cfyE00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3860 — Proton glutamate symport protein
Homologous superfamily homologous superfamily10 — Sodium:dicarboxylate symporter
Domain ID domain_id5cfyF00
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3860 — Proton glutamate symport protein
Homologous superfamily homologous superfamily10 — Sodium:dicarboxylate symporter
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7. Citations (1)