SAXSdb — 5y6o

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1. Protein Identity and Related Structures Protein Identity & Related Structures

Death domain-associated protein 6,Transcriptional regulator ATRX

Homo sapiens

State in the Current Structure

Assembly	Physical composition	Protein state	Molecular copy count	Associated components	Data consistency
1	Insufficient information	Homooligomer	Protein 3	No other associated polymer	Consistent with protein count
2	Insufficient information	Homooligomer	Protein 3	No other associated polymer	Consistent with protein count
3	Insufficient information	Homooligomer	Protein 3	No other associated polymer	Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence

UniProt name	ATRX_HUMAN
Isoform	—
PDB entities	1
Chains and sequence ranges	Author chain A； PDBConstruct 96–119； UniProt 1265–1288 Author chain B； PDBConstruct 96–119； UniProt 1265–1288 Author chain C； PDBConstruct 96–119； UniProt 1265–1288 Author chain D； PDBConstruct 96–119； UniProt 1265–1288 Author chain E； PDBConstruct 96–119； UniProt 1265–1288 Author chain F； PDBConstruct 96–119； UniProt 1265–1288 Author chain G； PDBConstruct 96–119； UniProt 1265–1288 Author chain H； PDBConstruct 96–119； UniProt 1265–1288 Author chain I； PDBConstruct 96–119； UniProt 1265–1288

Death domain-associated protein 6,Transcriptional regulator ATRX

Homo sapiens

UniProt Q9UER7

State in the Current Structure

Assembly	Physical composition	Protein state	Molecular copy count	Associated components	Data consistency
1	Insufficient information	Homooligomer	Protein 3	No other associated polymer	Consistent with protein count
2	Insufficient information	Homooligomer	Protein 3	No other associated polymer	Consistent with protein count
3	Insufficient information	Homooligomer	Protein 3	No other associated polymer	Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence

UniProt name	DAXX_HUMAN
Isoform	—
PDB entities	1
Chains and sequence ranges	Author chain A； PDBConstruct 1–95； UniProt 50–144 Author chain B； PDBConstruct 1–95； UniProt 50–144 Author chain C； PDBConstruct 1–95； UniProt 50–144 Author chain D； PDBConstruct 1–95； UniProt 50–144 Author chain E； PDBConstruct 1–95； UniProt 50–144 Author chain F； PDBConstruct 1–95； UniProt 50–144 Author chain G； PDBConstruct 1–95； UniProt 50–144 Author chain H； PDBConstruct 1–95； UniProt 50–144 Author chain I； PDBConstruct 1–95； UniProt 50–144

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id	5y6o
Deposition date deposition_date	2017-08-13
Structure title title	Crystal structure of DAXX N-terminal four-helix bundle domain (4HB) in complex with ATRX
Keywords keywords	Histone chaperone, Gene repressor, GENE REGULATION; GENE REGULATION
Experimental Method method	X-RAY DIFFRACTION

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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

5y6o__assembly_2__model_1

Assembly 2 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

5y6o__assembly_2__model_1 | I(q)

100 plotted points; both axes use logarithmic scales.

5y6o__assembly_2__model_1 | P(r) · Pending

P(r) will be calculated and displayed separately for the same assembly/model.

Rg（Guinier）	22.01 Å
Rg (electron density)	20.84 Å
Total Rg	21.78 Å
Atom count	2501
Residues	320
Excluded volume	44804 Å³
Maximum q	0.500 Å⁻¹

Assembly	Model	Structure unit	Oligomeric description	Status	CRYSOL	Actions
1	1	`5y6o__assembly_1__model_1`	trimeric （3）	Success	4.1.3-1-20251215 (887e7ef)	View Download
2	1	`5y6o__assembly_2__model_1`	trimeric （3）	Success	4.1.3-1-20251215 (887e7ef)	View Download
3	1	`5y6o__assembly_3__model_1`	trimeric （3）	Success	4.1.3-1-20251215 (887e7ef)	View Download

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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (1)

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Unit-cell length a length_a	78.666 Å
Unit-cell length b length_b	78.666 Å
Unit-cell length c length_c	503.215 Å
Unit-cell angle α angle_alpha	90.00 °
Unit-cell angle β angle_beta	90.00 °
Unit-cell angle γ angle_gamma	120.00 °
Molecules per unit cell Z z_pdb	54

Space group space_group	P 31 2 1
Space-group number int_tables_number	152
Crystal system crystal_system	—

Resolution resolution	3.100 Å
Low-resolution limit resolution_low	83.869 Å
R factor r_factor	0.2274
R_work r_work	0.2238
R_free r_free	0.2972

Description description	Death domain-associated protein 6,Transcriptional regulator ATRX
Molecular weight formula_weight	13686.8 kDa
EC 编号 ec_number	3.6.4.12
Source method src_method	man
Copy count entity_count	9

Polymer type type	polypeptide(L)
Chain IDs strand_id	A,B,C,D,E,F,G,H,I
Atom count atom_count	7467

Crystal structure of DAXX N-terminal four-helix bundle domain (4HB) in complex with ATRX

1. Protein Identity and Related Structures Protein Identity & Related Structures

Death domain-associated protein 6,Transcriptional regulator ATRX

State in the Current Structure

Other States of the Same Protein in the Database

Death domain-associated protein 6,Transcriptional regulator ATRX

State in the Current Structure

Other States of the Same Protein in the Database

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

5y6o__assembly_2__model_1

5y6o__assembly_2__model_1 | I(q)

5y6o__assembly_2__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

Refinement Refinement

Diffraction experiment Diffraction

5. Entities and Polymers Entities & Polymers (1)

Entity 1 Entity 1 polymer

Polymer Polymer

Source Source

7. Citations (1)

Source organism organism	Homo sapiens
Common name common_name	Human
NCBI taxonomy ID ncbi_taxonomy_id	9606
Host organism host_organism	Escherichia coli

Crystal structure of DAXX N-terminal four-helix bundle domain (4HB) in complex with ATRX

1. Protein Identity and Related Structures Protein Identity & Related Structures

Death domain-associated protein 6,Transcriptional regulator ATRX

State in the Current Structure

Other States of the Same Protein in the Database

Monomer

Homodimer

Homotetramer

Other homooligomers

Heteromeric or nucleic-acid complex

Death domain-associated protein 6,Transcriptional regulator ATRX

State in the Current Structure

Other States of the Same Protein in the Database

Monomer

Homodimer

Homotetramer

Other homooligomers

Heteromeric or nucleic-acid complex

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

5y6o__assembly_2__model_1

5y6o__assembly_2__model_1 | I(q)

5y6o__assembly_2__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

Refinement Refinement

Diffraction experiment Diffraction

5. Entities and Polymers Entities & Polymers (1)

Entity 1 Entity 1 polymer

Polymer Polymer

Source Source

7. Citations (1)