|
6BHJ
Structure of HIV-1 Reverse Transcriptase Bound to a 38-mer Hairpin Template-Primer RNA-DNA Aptamer
Deposited 2017-10-30
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Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Homooligomer;Protein × 2
PDB declaration: trimeric
|
Chain A
166–722(557 aa)
Chain B
168–595(428 aa)
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Mutation:C280S, D498N
Mutation:C280S
|
MG MAGNESIUM ION × 1
GOL GLYCEROL × 4
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.2;278 K;10% PEG 8000, 25 mM BisTris-Propane pH 6.8, 75 mM BisTris-Propane pH 7.4, 50 mM Ammonium Sulfate, 5% glycerol, 5% sucrose
|
Resolution 2.81 Å
R-free 0.244
|
|
6BHJ
Structure of HIV-1 Reverse Transcriptase Bound to a 38-mer Hairpin Template-Primer RNA-DNA Aptamer
Deposited 2017-10-30
|
Different construct
Different mutation/modification
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 2
Protein–DNA
Homooligomer;Protein × 2
PDB declaration: trimeric
|
Chain C
166–722(557 aa)
Chain D
168–595(428 aa)
|
Mutation:C280S, D498N
Mutation:C280S
|
MG MAGNESIUM ION × 1
GOL GLYCEROL × 2
SO4 SULFATE ION × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;pH 7.2;278 K;10% PEG 8000, 25 mM BisTris-Propane pH 6.8, 75 mM BisTris-Propane pH 7.4, 50 mM Ammonium Sulfate, 5% glycerol, 5% sucrose
|
Resolution 2.81 Å
R-free 0.244
|
|
6BSH
Structure of HIV-1 RT complexed with RNA/DNA hybrid in the RNA hydrolysis mode
Deposited 2017-12-03
|
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Other combination
Heteromer;Protein × 2
PDB declaration: tetrameric
|
Chain B
168–607(440 aa)
|
Not recorded
|
EFZ (-)-6-CHLORO-4-CYCLOPROPYLETHYNYL-4-TRIFLUOROMETHYL-1,4-DIHYDRO-2H-3,1-BENZOXAZIN-2-ONE × 1
CA CALCIUM ION × 2
GOL GLYCEROL × 6
TAM TRIS(HYDROXYETHYL)AMINOMETHANE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;295 K;Sodium citrate pH 5.2, CaCl2, PEG400
|
Resolution 2.65 Å
R-free 0.227
|
|
6BSI
Structure of HIV-1 RT complexed with an RNA/DNA hybrid containing the polypurine-tract sequence
Deposited 2017-12-03
|
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Other combination
Heteromer;Protein × 2
PDB declaration: tetrameric
|
Chain B
168–607(440 aa)
|
Not recorded
|
EFZ (-)-6-CHLORO-4-CYCLOPROPYLETHYNYL-4-TRIFLUOROMETHYL-1,4-DIHYDRO-2H-3,1-BENZOXAZIN-2-ONE × 1
CA CALCIUM ION × 2
GOL GLYCEROL × 2
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;295 K;Sodium citrate pH 5.2, CaCl2, PEG400
|
Resolution 3.25 Å
R-free 0.241
|
|
6BSJ
Structure of HIV-1 RT complexed with an RNA/DNA hybrid sequence non-preferred for RNA hydrolysis
Deposited 2017-12-03
|
Different ligand/ion
Different structure-quality metrics
|
Assembly 1
Other combination
Heteromer;Protein × 2
PDB declaration: tetrameric
|
Chain B
168–607(440 aa)
|
Not recorded
|
EFZ (-)-6-CHLORO-4-CYCLOPROPYLETHYNYL-4-TRIFLUOROMETHYL-1,4-DIHYDRO-2H-3,1-BENZOXAZIN-2-ONE × 1
CA CALCIUM ION × 1
GOL GLYCEROL × 4
TAM TRIS(HYDROXYETHYL)AMINOMETHANE × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;295 K;Sodium citrate pH 5.2, CaCl2, PEG400
|
Resolution 2.89 Å
R-free 0.251
|
|
6VUG
Diabody bound to a Reverse Transcriptase Aptamer Complex
Deposited 2020-02-15
|
Different construct
Different oligomeric state
Different ligand/ion
Different experimental conditions
Different structure-quality metrics
|
Assembly 1
Protein–DNA
Heteromer;Protein × 4
PDB declaration: pentameric
|
Chain B
168–595(428 aa)
Fragment:P51 subunit, residues 168-595
|
Not recorded
|
SO4 SULFATE ION × 11
GOL GLYCEROL × 1
|
X-RAY DIFFRACTION
X-ray crystallization conditions
VAPOR DIFFUSION, HANGING DROP;293 K;1.4 M Ammonium Sulfate
0.1 M HEPES pH 7.8
0.1 M NaCl
|
Resolution 3.00 Å
R-free 0.255
|