6ewk

T. californica AChE in complex with a 3-hydroxy-2-pyridine aldoxime.

Method: X-RAY DIFFRACTION Dmax: 76.5 Å Quality: REASONABLE

1. Protein Identity and Related Structures Protein Identity & Related Structures

Acetylcholinesterase

OrganismNot specified

UniProt P04058

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein homooligomer Homooligomer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain A; UniProt 25–556 Not recorded NAG 2-acetamido-2-deoxy-beta-D-glucopyranose × 6 RM0 2-[(~{E})-hydroxyiminomethyl]-6-(5-morpholin-4-ylpentyl)pyridin-3-ol × 2 1PE PENTAETHYLENE GLYCOL × 6 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 5.4;299 K;Polyethylen glycol 200 36 % MES 100 mM pH 5.4 Resolution 2.22 Å R-free 0.220

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

124 other PDB entries and 125 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name ACES_TETCF
Isoform P04058-2
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–532; UniProt 25–556

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 6ewk

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 6ewk
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2. Structure Basics 2. Structure Basics

Entry ID entry_id6ewk
Deposition date deposition_date2017-11-04
Structure title titleT. californica AChE in complex with a 3-hydroxy-2-pyridine aldoxime.
Keywords keywordsAcetylcholinesterase, reactivator, aldehyde oxime, organophosphate poisoning, hydrolase; HYDROLASE
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier24.04
Radius of gyration Rg (electron density) rg_electron22.69
Forward intensity I(0) i060648100.00
Molecular weight molecular_weight61416.0 kDa
Excluded volume excluded_volume76991 ų
Envelope volume envelope_volume87273 ų
Hydration-shell volume shell_volume30715 ų
Envelope diameter envelope_diameter77.8
Shell Rg shell_rg31.06
Envelope Rg envelope_rg23.06
Shape Rg shape_rg22.64
Total Rg total_rg23.77
Total atoms total_atoms4334
Residues n_residues532
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax76.5
Rg (real space) rg_real23.87
Rg uncertainty (real space) rg_real_error0.39
I(0) (real space) i0_real6.0650e+07
I(0) uncertainty (real space) i0_real_error8.3860e+05
Rg (reciprocal space) rg_reciprocal23.91
I(0) (reciprocal space) i0_reciprocal60650000.0000
Solution quality estimate total_estimate0.7069
Solution quality rating solution_quality REASONABLE a REASONABLE solution
P(r) peaks n_peaks1
Primary peak position r_peak_primary75.3
Skewness Skewness skewness0.149
Kurtosis Kurtosis kurtosis-0.412
Angular range angular_range— – 0.3300 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha18250000.0000
Real-space data points n_real_points65
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.863; Stabil: 1.000; Sysdev: 0.203; Positv: 1.000; Valcen: 0.991; Smooth: 0.995

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (5)

7. Fold Classification (SCOP + CATH) 2 domains

SCOP 2.08 (1 domains)

Domain ID domain_idd6ewka_
Class classc — Alpha and beta proteins (a/b)
Fold Fold foldc.69 — alpha/beta-Hydrolases
Superfamily Superfamily superfamilyc.69.1 — alpha/beta-Hydrolases
Family Family familyc.69.1.1 — Acetylcholinesterase-like

CATH v4.4 (1 domains)

Domain ID domain_id6ewkA00
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology50 — Rossmann fold
Homologous superfamily homologous superfamily1820 — Alpha/Beta hydrolase fold, catalytic domain

8. Citations (1)

9. Files and Curves (10)