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6fdd

Crystal Structure of the HHD2 Domain of Whirlin

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Whirlin

Mus musculus

UniProt Q80VW5

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein monomer Monomer Protein 1 water × 1 Consistent with protein count
2 Protein monomer Monomer Protein 1 SULFATE ION × 2 water × 1 Consistent with protein count
3 Protein monomer Monomer Protein 1 water × 1 Consistent with protein count
4 Protein monomer Monomer Protein 1 SULFATE ION × 1 water × 1 Consistent with protein count
5 Protein monomer Monomer Protein 1 SULFATE ION × 1 water × 1 Consistent with protein count
6 Protein monomer Monomer Protein 1 SULFATE ION × 3 water × 1 Consistent with protein count

Other States of the Same Protein in the Database

Monomer
6fdd 6fdd 6fdd 6fdd 6fdd 6fdd

6 assemblies

Homodimer
6fde

1 assemblies

Homotetramer

None

Other homooligomers

None

Heteromeric or nucleic-acid complex
6y38 6y9n 6y9o 6y9p 6y9p 6y9p 6y9p 6y9p 6y9p 6y9q

10 assemblies

View Construct and Data Evidence
UniProt name WHRN_MOUSE
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A； PDBConstruct 6–85； UniProt 420–499 Author chain B； PDBConstruct 6–85； UniProt 420–499 Author chain C； PDBConstruct 6–85； UniProt 420–499 Author chain D； PDBConstruct 6–85； UniProt 420–499 Author chain E； PDBConstruct 6–85； UniProt 420–499 Author chain F； PDBConstruct 6–85； UniProt 420–499

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id6fdd
Deposition date deposition_date2017-12-22
Structure title titleCrystal Structure of the HHD2 Domain of Whirlin
Keywords keywordsUsher syndrome, scaffold protein, hearing, deafness, STRUCTURAL PROTEIN; STRUCTURAL PROTEIN
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

6fdd__assembly_6__model_1

Assembly 6 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

6fdd__assembly_6__model_1 | I(q)

10-2 10-1 105 106 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

6fdd__assembly_6__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）13.71 Å
Rg (electron density)11.97 Å
Total Rg13.21 Å
Atom count623
Residues71
Excluded volume11060 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 6fdd__assembly_1__model_1 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
2 1 6fdd__assembly_2__model_1 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
3 1 6fdd__assembly_3__model_1 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
4 1 6fdd__assembly_4__model_1 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
5 1 6fdd__assembly_5__model_1 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
6 1 6fdd__assembly_6__model_1 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (3)

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7. Citations (1)