6hht

Echovirus 18 Open particle without two pentamers

Method: ELECTRON MICROSCOPY Dmax: 348.7 Å Quality: EXCELLENT

1. Protein Identity and Related Structures Protein Identity & Related Structures

Echovirus 18 capsid protein 1

OrganismNot specified

UniProt Q8V635

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein homooligomer Homooligomer Protein × 150 PDB declaration: 150-meric(150) Consistent with protein copy count Chain A1; UniProt 569–855 Chain A2; UniProt 569–855 Chain B1; UniProt 70–329 Chain B2; UniProt 70–329 Chain C1; UniProt 330–568 Chain C2; UniProt 330–568 Chain D1; UniProt 569–855 Chain D2; UniProt 569–855 Chain E1; UniProt 70–329 Chain E2; UniProt 70–329 Chain F1; UniProt 330–568 Chain F2; UniProt 330–568 Chain G1; UniProt 569–855 Chain G2; UniProt 569–855 Chain H1; UniProt 70–329 Chain H2; UniProt 70–329 Chain I1; UniProt 330–568 Chain I2; UniProt 330–568 Chain J1; UniProt 569–855 Chain J2; UniProt 569–855 Chain K1; UniProt 70–329 Chain K2; UniProt 70–329 Chain L1; UniProt 330–568 Chain L2; UniProt 330–568 Chain M1; UniProt 569–855 Chain M2; UniProt 569–855 Chain N1; UniProt 70–329 Chain N2; UniProt 70–329 Chain O1; UniProt 330–568 Chain O2; UniProt 330–568 Chain P1; UniProt 569–855 Chain P2; UniProt 569–855 Chain Q1; UniProt 70–329 Chain Q2; UniProt 70–329 Chain R1; UniProt 330–568 Chain R2; UniProt 330–568 Chain S1; UniProt 569–855 Chain S2; UniProt 569–855 Chain T1; UniProt 70–329 Chain T2; UniProt 70–329 Chain U1; UniProt 330–568 Chain U2; UniProt 330–568 Chain V1; UniProt 569–855 Chain V2; UniProt 569–855 Chain W1; UniProt 70–329 Chain W2; UniProt 70–329 Chain X1; UniProt 330–568 Chain X2; UniProt 330–568 Chain Y2; UniProt 569–855 Chain Z2; UniProt 70–329 Chain a2; UniProt 330–568 Chain b2; UniProt 569–855 Chain c2; UniProt 70–329 Chain d2; UniProt 330–568 Chain e2; UniProt 569–855 Chain f2; UniProt 70–329 Chain g2; UniProt 330–568 Chain h2; UniProt 569–855 Chain i2; UniProt 70–329 Chain j2; UniProt 330–568 Chain k2; UniProt 569–855 Chain l2; UniProt 70–329 Chain m2; UniProt 330–568 Chain n2; UniProt 569–855 Chain o2; UniProt 70–329 Chain p2; UniProt 330–568 Chain q2; UniProt 569–855 Chain r2; UniProt 70–329 Chain s2; UniProt 330–568 Chain t2; UniProt 569–855 Chain u2; UniProt 70–329 Chain v2; UniProt 330–568 Chain w2; UniProt 569–855 Chain x2; UniProt 70–329 Chain y2; UniProt 330–568 Not recorded No other associated polymer ELECTRON MICROSCOPY cryo-EM buffer:pH 6 cryo-EM vitrification conditions:Cryogen ETHANE Resolution 4.05 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

6 other PDB entries and 14 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name Q8V635_9ENTO
Isoform
PDB entities 1, 2, 3
Chains and sequence ranges Author chain A1; PDBConstruct 1–287; UniProt 569–855 Author chain A2; PDBConstruct 1–287; UniProt 569–855 Author chain D1; PDBConstruct 1–287; UniProt 569–855 Author chain D2; PDBConstruct 1–287; UniProt 569–855 Author chain G1; PDBConstruct 1–287; UniProt 569–855 Author chain G2; PDBConstruct 1–287; UniProt 569–855 Author chain J1; PDBConstruct 1–287; UniProt 569–855 Author chain J2; PDBConstruct 1–287; UniProt 569–855 Author chain M1; PDBConstruct 1–287; UniProt 569–855 Author chain M2; PDBConstruct 1–287; UniProt 569–855 Author chain P1; PDBConstruct 1–287; UniProt 569–855 Author chain P2; PDBConstruct 1–287; UniProt 569–855 Author chain S1; PDBConstruct 1–287; UniProt 569–855 Author chain S2; PDBConstruct 1–287; UniProt 569–855 Author chain V1; PDBConstruct 1–287; UniProt 569–855 Author chain V2; PDBConstruct 1–287; UniProt 569–855 Author chain Y2; PDBConstruct 1–287; UniProt 569–855 Author chain b2; PDBConstruct 1–287; UniProt 569–855 Author chain e2; PDBConstruct 1–287; UniProt 569–855 Author chain h2; PDBConstruct 1–287; UniProt 569–855 Author chain k2; PDBConstruct 1–287; UniProt 569–855 Author chain n2; PDBConstruct 1–287; UniProt 569–855 Author chain q2; PDBConstruct 1–287; UniProt 569–855 Author chain t2; PDBConstruct 1–287; UniProt 569–855 Author chain w2; PDBConstruct 1–287; UniProt 569–855 Author chain B1; PDBConstruct 1–260; UniProt 70–329 Author chain B2; PDBConstruct 1–260; UniProt 70–329 Author chain E1; PDBConstruct 1–260; UniProt 70–329 Author chain E2; PDBConstruct 1–260; UniProt 70–329 Author chain H1; PDBConstruct 1–260; UniProt 70–329 Author chain H2; PDBConstruct 1–260; UniProt 70–329 Author chain K1; PDBConstruct 1–260; UniProt 70–329 Author chain K2; PDBConstruct 1–260; UniProt 70–329 Author chain N1; PDBConstruct 1–260; UniProt 70–329 Author chain N2; PDBConstruct 1–260; UniProt 70–329 Author chain Q1; PDBConstruct 1–260; UniProt 70–329 Author chain Q2; PDBConstruct 1–260; UniProt 70–329 Author chain T1; PDBConstruct 1–260; UniProt 70–329 Author chain T2; PDBConstruct 1–260; UniProt 70–329 Author chain W1; PDBConstruct 1–260; UniProt 70–329 Author chain W2; PDBConstruct 1–260; UniProt 70–329 Author chain Z2; PDBConstruct 1–260; UniProt 70–329 Author chain c2; PDBConstruct 1–260; UniProt 70–329 Author chain f2; PDBConstruct 1–260; UniProt 70–329 Author chain i2; PDBConstruct 1–260; UniProt 70–329 Author chain l2; PDBConstruct 1–260; UniProt 70–329 Author chain o2; PDBConstruct 1–260; UniProt 70–329 Author chain r2; PDBConstruct 1–260; UniProt 70–329 Author chain u2; PDBConstruct 1–260; UniProt 70–329 Author chain x2; PDBConstruct 1–260; UniProt 70–329 Author chain C1; PDBConstruct 1–239; UniProt 330–568 Author chain C2; PDBConstruct 1–239; UniProt 330–568 Author chain F1; PDBConstruct 1–239; UniProt 330–568 Author chain F2; PDBConstruct 1–239; UniProt 330–568 Author chain I1; PDBConstruct 1–239; UniProt 330–568 Author chain I2; PDBConstruct 1–239; UniProt 330–568 Author chain L1; PDBConstruct 1–239; UniProt 330–568 Author chain L2; PDBConstruct 1–239; UniProt 330–568 Author chain O1; PDBConstruct 1–239; UniProt 330–568 Author chain O2; PDBConstruct 1–239; UniProt 330–568 Author chain R1; PDBConstruct 1–239; UniProt 330–568 Author chain R2; PDBConstruct 1–239; UniProt 330–568 Author chain U1; PDBConstruct 1–239; UniProt 330–568 Author chain U2; PDBConstruct 1–239; UniProt 330–568 Author chain X1; PDBConstruct 1–239; UniProt 330–568 Author chain X2; PDBConstruct 1–239; UniProt 330–568 Author chain a2; PDBConstruct 1–239; UniProt 330–568 Author chain d2; PDBConstruct 1–239; UniProt 330–568 Author chain g2; PDBConstruct 1–239; UniProt 330–568 Author chain j2; PDBConstruct 1–239; UniProt 330–568 Author chain m2; PDBConstruct 1–239; UniProt 330–568 Author chain p2; PDBConstruct 1–239; UniProt 330–568 Author chain s2; PDBConstruct 1–239; UniProt 330–568 Author chain v2; PDBConstruct 1–239; UniProt 330–568 Author chain y2; PDBConstruct 1–239; UniProt 330–568

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 6hht

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 6hht
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2. Structure Basics 2. Structure Basics

Entry ID entry_id6hht
Deposition date deposition_date2018-08-29
Structure title titleEchovirus 18 Open particle without two pentamers
Keywords keywordsechovirus, echovirus 18, open particle, O-particle, enterovirus, picornavirus, VIRUS, genome release; VIRUS
Experimental Method methodELECTRON MICROSCOPY

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier
Radius of gyration Rg (electron density) rg_electron124.40
Forward intensity I(0) i045365900000.00
Molecular weight molecular_weight1848500.0 kDa
Excluded volume excluded_volume2318600 ų
Envelope volume envelope_volume5375800 ų
Hydration-shell volume shell_volume372020 ų
Envelope diameter envelope_diameter330.2
Shell Rg shell_rg126.70
Envelope Rg envelope_rg110.40
Shape Rg shape_rg124.30
Total Rg total_rg124.40
Total atoms total_atoms129900
Residues n_residues17000
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax348.7
Rg (real space) rg_real125.40
Rg uncertainty (real space) rg_real_error1.42
I(0) (real space) i0_real4.4840e+10
I(0) uncertainty (real space) i0_real_error8.9190e+08
Rg (reciprocal space) rg_reciprocal122.50
I(0) (reciprocal space) i0_reciprocal44670000000.0000
Solution quality estimate total_estimate0.9040
Solution quality rating solution_quality EXCELLENT a EXCELLENT solution
P(r) peaks n_peaks1
Primary peak position r_peak_primary145.3
Skewness Skewness skewness-0.054
Kurtosis Kurtosis kurtosis-0.984
Angular range angular_range— – 0.0600 −1
Current regularization parameter α current_alpha1.2010
Highest regularization parameter α highest_alpha566200000.0000
Real-space data points n_real_points13
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.996; Stabil: 0.928; Sysdev: 1.000; Positv: 1.000; Valcen: 0.984; Smooth: 0.000

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (3)

8. Citations (1)

9. Files and Curves (10)