6km0

Human Carbonic Anhydrase II V143I variant 07 atm CO2

Method: X-RAY DIFFRACTION Dmax: 61.7 Å Quality: REASONABLE

1. Protein Identity and Related Structures Protein Identity & Related Structures

Carbonic anhydrase 2

Homo sapiens

UniProt P00918

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain A; UniProt 1–260 Mutation:V143I ZN ZINC ION × 1 GOL GLYCEROL × 1 BCT BICARBONATE ION × 1 CO2 CARBON DIOXIDE × 1 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 8;293 K;1.3 M sodium citrate, 100 mM Tris-HCl Resolution 0.93 Å R-free 0.122

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

1239 other PDB entries and 1272 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name CAH2_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–260; UniProt 1–260

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 6km0

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 6km0
Download Download

2. Structure Basics 2. Structure Basics

Entry ID entry_id6km0
Deposition date deposition_date2019-07-30
Structure title titleHuman Carbonic Anhydrase II V143I variant 07 atm CO2
Keywords keywordscarbonic anhydrase II, intermediate states, water network, point mutation, LYASE; LYASE
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier18.60
Radius of gyration Rg (electron density) rg_electron17.32
Forward intensity I(0) i014733200.00
Molecular weight molecular_weight29166.0 kDa
Excluded volume excluded_volume36612 ų
Envelope volume envelope_volume40796 ų
Hydration-shell volume shell_volume19082 ų
Envelope diameter envelope_diameter60.9
Shell Rg shell_rg24.10
Envelope Rg envelope_rg17.72
Shape Rg shape_rg17.29
Total Rg total_rg18.43
Total atoms total_atoms4089
Residues n_residues257
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax61.7
Rg (real space) rg_real18.46
Rg uncertainty (real space) rg_real_error0.38
I(0) (real space) i0_real1.4730e+07
I(0) uncertainty (real space) i0_real_error1.7350e+05
Rg (reciprocal space) rg_reciprocal18.48
I(0) (reciprocal space) i0_reciprocal14730000.0000
Solution quality estimate total_estimate0.6256
Solution quality rating solution_quality REASONABLE a REASONABLE solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary55.8
Skewness Skewness skewness0.071
Kurtosis Kurtosis kurtosis-0.452
Angular range angular_range— – 0.4300 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha2814000.0000
Real-space data points n_real_points74
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.786; Stabil: 1.000; Sysdev: 0.259; Positv: 1.000; Valcen: 0.995; Smooth: 0.000

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (6)

7. Fold Classification (SCOP + CATH) 1 domains

SCOP 2.08 (1 domains)

Domain ID domain_idd6km0a_
Class classb — All beta proteins
Fold Fold foldb.74 — Carbonic anhydrase
Superfamily Superfamily superfamilyb.74.1 — Carbonic anhydrase
Family Family familyb.74.1.1 — Carbonic anhydrase

8. Citations (1)

9. Files and Curves (10)