6ks6

TRiC at 0.2 mM ADP-AlFx, Conformation 1, 0.2-C1

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

T-complex protein 1 subunit alpha

OrganismNot specified

UniProt P12612

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 16 T-complex protein 1 subunit beta × 2 (P39076) T-complex protein 1 subunit delta × 2 (P39078) T-complex protein 1 subunit epsilon × 2 (P40413) fusion protein of T-complex protein 1 subunit gamma,rep-His-CBP and T-complex protein 1 subunit gamma × 2 (P39077) T-complex protein 1 subunit eta × 2 (P42943) T-complex protein 1 subunit theta × 2 (P47079) T-complex protein 1 subunit zeta × 2 (P39079) ADENOSINE-5'-DIPHOSPHATE × 16 MAGNESIUM ION × 16 ALUMINUM FLUORIDE × 14 water × 14 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TCPA_YEAST
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–559; UniProt 1–559 Author chain a; PDBConstruct 1–559; UniProt 1–559

T-complex protein 1 subunit beta

OrganismNot specified

UniProt P39076

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 16 T-complex protein 1 subunit alpha × 2 (P12612) T-complex protein 1 subunit delta × 2 (P39078) T-complex protein 1 subunit epsilon × 2 (P40413) fusion protein of T-complex protein 1 subunit gamma,rep-His-CBP and T-complex protein 1 subunit gamma × 2 (P39077) T-complex protein 1 subunit eta × 2 (P42943) T-complex protein 1 subunit theta × 2 (P47079) T-complex protein 1 subunit zeta × 2 (P39079) ADENOSINE-5'-DIPHOSPHATE × 16 MAGNESIUM ION × 16 ALUMINUM FLUORIDE × 14 water × 14 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TCPB_YEAST
Isoform —
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–527; UniProt 1–527 Author chain b; PDBConstruct 1–527; UniProt 1–527

T-complex protein 1 subunit delta

OrganismNot specified

UniProt P39078

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 16 T-complex protein 1 subunit alpha × 2 (P12612) T-complex protein 1 subunit beta × 2 (P39076) T-complex protein 1 subunit epsilon × 2 (P40413) fusion protein of T-complex protein 1 subunit gamma,rep-His-CBP and T-complex protein 1 subunit gamma × 2 (P39077) T-complex protein 1 subunit eta × 2 (P42943) T-complex protein 1 subunit theta × 2 (P47079) T-complex protein 1 subunit zeta × 2 (P39079) ADENOSINE-5'-DIPHOSPHATE × 16 MAGNESIUM ION × 16 ALUMINUM FLUORIDE × 14 water × 14 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TCPD_YEAST
Isoform —
PDB entities 3
Chains and sequence ranges Author chain D; PDBConstruct 1–528; UniProt 1–528 Author chain d; PDBConstruct 1–528; UniProt 1–528

T-complex protein 1 subunit epsilon

OrganismNot specified

UniProt P40413

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 16 T-complex protein 1 subunit alpha × 2 (P12612) T-complex protein 1 subunit beta × 2 (P39076) T-complex protein 1 subunit delta × 2 (P39078) fusion protein of T-complex protein 1 subunit gamma,rep-His-CBP and T-complex protein 1 subunit gamma × 2 (P39077) T-complex protein 1 subunit eta × 2 (P42943) T-complex protein 1 subunit theta × 2 (P47079) T-complex protein 1 subunit zeta × 2 (P39079) ADENOSINE-5'-DIPHOSPHATE × 16 MAGNESIUM ION × 16 ALUMINUM FLUORIDE × 14 water × 14 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TCPE_YEAST
Isoform —
PDB entities 4
Chains and sequence ranges Author chain E; PDBConstruct 1–562; UniProt 1–562 Author chain e; PDBConstruct 1–562; UniProt 1–562

fusion protein of T-complex protein 1 subunit gamma,rep-His-CBP and T-complex protein 1 subunit gamma

OrganismNot specified

UniProt P39077

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 16 T-complex protein 1 subunit alpha × 2 (P12612) T-complex protein 1 subunit beta × 2 (P39076) T-complex protein 1 subunit delta × 2 (P39078) T-complex protein 1 subunit epsilon × 2 (P40413) T-complex protein 1 subunit eta × 2 (P42943) T-complex protein 1 subunit theta × 2 (P47079) T-complex protein 1 subunit zeta × 2 (P39079) ADENOSINE-5'-DIPHOSPHATE × 16 MAGNESIUM ION × 16 ALUMINUM FLUORIDE × 14 water × 14 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TCPG_YEAST
Isoform —
PDB entities 5
Chains and sequence ranges Author chain G; PDBConstruct 1–374; UniProt 1–374 Author chain G; PDBConstruct 435–594; UniProt 375–534 Author chain g; PDBConstruct 1–374; UniProt 1–374 Author chain g; PDBConstruct 435–594; UniProt 375–534

T-complex protein 1 subunit eta

OrganismNot specified

UniProt P42943

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 16 T-complex protein 1 subunit alpha × 2 (P12612) T-complex protein 1 subunit beta × 2 (P39076) T-complex protein 1 subunit delta × 2 (P39078) T-complex protein 1 subunit epsilon × 2 (P40413) fusion protein of T-complex protein 1 subunit gamma,rep-His-CBP and T-complex protein 1 subunit gamma × 2 (P39077) T-complex protein 1 subunit theta × 2 (P47079) T-complex protein 1 subunit zeta × 2 (P39079) ADENOSINE-5'-DIPHOSPHATE × 16 MAGNESIUM ION × 16 ALUMINUM FLUORIDE × 14 water × 14 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TCPH_YEAST
Isoform —
PDB entities 6
Chains and sequence ranges Author chain H; PDBConstruct 1–550; UniProt 1–550 Author chain h; PDBConstruct 1–550; UniProt 1–550

T-complex protein 1 subunit theta

OrganismNot specified

UniProt P47079

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 16 T-complex protein 1 subunit alpha × 2 (P12612) T-complex protein 1 subunit beta × 2 (P39076) T-complex protein 1 subunit delta × 2 (P39078) T-complex protein 1 subunit epsilon × 2 (P40413) fusion protein of T-complex protein 1 subunit gamma,rep-His-CBP and T-complex protein 1 subunit gamma × 2 (P39077) T-complex protein 1 subunit eta × 2 (P42943) T-complex protein 1 subunit zeta × 2 (P39079) ADENOSINE-5'-DIPHOSPHATE × 16 MAGNESIUM ION × 16 ALUMINUM FLUORIDE × 14 water × 14 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TCPQ_YEAST
Isoform —
PDB entities 7
Chains and sequence ranges Author chain Q; PDBConstruct 1–568; UniProt 1–568 Author chain q; PDBConstruct 1–568; UniProt 1–568

T-complex protein 1 subunit zeta

OrganismNot specified

UniProt P39079

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 16 T-complex protein 1 subunit alpha × 2 (P12612) T-complex protein 1 subunit beta × 2 (P39076) T-complex protein 1 subunit delta × 2 (P39078) T-complex protein 1 subunit epsilon × 2 (P40413) fusion protein of T-complex protein 1 subunit gamma,rep-His-CBP and T-complex protein 1 subunit gamma × 2 (P39077) T-complex protein 1 subunit eta × 2 (P42943) T-complex protein 1 subunit theta × 2 (P47079) ADENOSINE-5'-DIPHOSPHATE × 16 MAGNESIUM ION × 16 ALUMINUM FLUORIDE × 14 water × 14 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TCPZ_YEAST
Isoform —
PDB entities 8
Chains and sequence ranges Author chain Z; PDBConstruct 1–546; UniProt 1–546 Author chain z; PDBConstruct 1–546; UniProt 1–546

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id6ks6
Deposition date deposition_date2019-08-23
Structure title titleTRiC at 0.2 mM ADP-AlFx, Conformation 1, 0.2-C1
Keywords keywordsChaperonin TRiC/CCT, Allosteric network, ATPase cycle, Conformational landscape, Cryo-EM, CHAPERONE; CHAPERONE
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

6ks6__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

6ks6__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 1010 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

6ks6__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)66.13 Å
Rg (electron density)64.97 Å
Total Rg65.11 Å
Atom count65500
Residues8502
Excluded volume1173100 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 6ks6__assembly_1__model_1 hexadecameric (16) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (12)

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6. Fold Classification (SCOP + CATH) 36 domains

CATH v4.4 (36 domains)

Domain ID domain_id6ks6A01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology560 — GROEL; domain 1
Homologous superfamily homologous superfamily10 — GroEL-like equatorial domain
Domain ID domain_id6ks6A02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology260 — GROEL; domain 2
Homologous superfamily homologous superfamily10 — TCP-1-like chaperonin intermediate domain
Domain ID domain_id6ks6B01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology560 — GROEL; domain 1
Homologous superfamily homologous superfamily10 — GroEL-like equatorial domain
Domain ID domain_id6ks6B02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology260 — GROEL; domain 2
Homologous superfamily homologous superfamily10 — TCP-1-like chaperonin intermediate domain
Domain ID domain_id6ks6B03
Class class3 — Alpha Beta
Architecture architecture50 — 3-Layer(bba) Sandwich
Topology topology7 — GroEL
Homologous superfamily homologous superfamily10 — GroEL
Domain ID domain_id6ks6D01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology560 — GROEL; domain 1
Homologous superfamily homologous superfamily10 — GroEL-like equatorial domain
Domain ID domain_id6ks6D03
Class class3 — Alpha Beta
Architecture architecture50 — 3-Layer(bba) Sandwich
Topology topology7 — GroEL
Homologous superfamily homologous superfamily10 — GroEL
Domain ID domain_id6ks6E01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology560 — GROEL; domain 1
Homologous superfamily homologous superfamily10 — GroEL-like equatorial domain
Domain ID domain_id6ks6E03
Class class3 — Alpha Beta
Architecture architecture50 — 3-Layer(bba) Sandwich
Topology topology7 — GroEL
Homologous superfamily homologous superfamily10 — GroEL
Domain ID domain_id6ks6G01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology560 — GROEL; domain 1
Homologous superfamily homologous superfamily10 — GroEL-like equatorial domain
Domain ID domain_id6ks6G02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology260 — GROEL; domain 2
Homologous superfamily homologous superfamily10 — TCP-1-like chaperonin intermediate domain
Domain ID domain_id6ks6H01
Class class3 — Alpha Beta
Architecture architecture50 — 3-Layer(bba) Sandwich
Topology topology7 — GroEL
Homologous superfamily homologous superfamily10 — GroEL
Domain ID domain_id6ks6Q01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology560 — GROEL; domain 1
Homologous superfamily homologous superfamily10 — GroEL-like equatorial domain
Domain ID domain_id6ks6Q02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology260 — GROEL; domain 2
Homologous superfamily homologous superfamily10 — TCP-1-like chaperonin intermediate domain
Domain ID domain_id6ks6Q03
Class class3 — Alpha Beta
Architecture architecture50 — 3-Layer(bba) Sandwich
Topology topology7 — GroEL
Homologous superfamily homologous superfamily10 — GroEL
Domain ID domain_id6ks6Z01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology560 — GROEL; domain 1
Homologous superfamily homologous superfamily10 — GroEL-like equatorial domain
Domain ID domain_id6ks6Z02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology260 — GROEL; domain 2
Homologous superfamily homologous superfamily10 — TCP-1-like chaperonin intermediate domain
Domain ID domain_id6ks6a01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology560 — GROEL; domain 1
Homologous superfamily homologous superfamily10 — GroEL-like equatorial domain
Domain ID domain_id6ks6a02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology260 — GROEL; domain 2
Homologous superfamily homologous superfamily10 — TCP-1-like chaperonin intermediate domain
Domain ID domain_id6ks6b01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology560 — GROEL; domain 1
Homologous superfamily homologous superfamily10 — GroEL-like equatorial domain
Domain ID domain_id6ks6b03
Class class3 — Alpha Beta
Architecture architecture50 — 3-Layer(bba) Sandwich
Topology topology7 — GroEL
Homologous superfamily homologous superfamily10 — GroEL
Domain ID domain_id6ks6d01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology560 — GROEL; domain 1
Homologous superfamily homologous superfamily10 — GroEL-like equatorial domain
Domain ID domain_id6ks6d03
Class class3 — Alpha Beta
Architecture architecture50 — 3-Layer(bba) Sandwich
Topology topology7 — GroEL
Homologous superfamily homologous superfamily10 — GroEL
Domain ID domain_id6ks6e01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology560 — GROEL; domain 1
Homologous superfamily homologous superfamily10 — GroEL-like equatorial domain
Domain ID domain_id6ks6e02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology260 — GROEL; domain 2
Homologous superfamily homologous superfamily10 — TCP-1-like chaperonin intermediate domain
Domain ID domain_id6ks6e03
Class class3 — Alpha Beta
Architecture architecture50 — 3-Layer(bba) Sandwich
Topology topology7 — GroEL
Homologous superfamily homologous superfamily10 — GroEL
Domain ID domain_id6ks6g01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology560 — GROEL; domain 1
Homologous superfamily homologous superfamily10 — GroEL-like equatorial domain
Domain ID domain_id6ks6g02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology260 — GROEL; domain 2
Homologous superfamily homologous superfamily10 — TCP-1-like chaperonin intermediate domain
Domain ID domain_id6ks6g03
Class class3 — Alpha Beta
Architecture architecture50 — 3-Layer(bba) Sandwich
Topology topology7 — GroEL
Homologous superfamily homologous superfamily10 — GroEL
Domain ID domain_id6ks6h01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology260 — GROEL; domain 2
Homologous superfamily homologous superfamily10 — TCP-1-like chaperonin intermediate domain
Domain ID domain_id6ks6h02
Class class3 — Alpha Beta
Architecture architecture50 — 3-Layer(bba) Sandwich
Topology topology7 — GroEL
Homologous superfamily homologous superfamily10 — GroEL
Domain ID domain_id6ks6q01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology560 — GROEL; domain 1
Homologous superfamily homologous superfamily10 — GroEL-like equatorial domain
Domain ID domain_id6ks6q02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology260 — GROEL; domain 2
Homologous superfamily homologous superfamily10 — TCP-1-like chaperonin intermediate domain
Domain ID domain_id6ks6q03
Class class3 — Alpha Beta
Architecture architecture50 — 3-Layer(bba) Sandwich
Topology topology7 — GroEL
Homologous superfamily homologous superfamily10 — GroEL
Domain ID domain_id6ks6z01
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology560 — GROEL; domain 1
Homologous superfamily homologous superfamily10 — GroEL-like equatorial domain
Domain ID domain_id6ks6z02
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology260 — GROEL; domain 2
Homologous superfamily homologous superfamily10 — TCP-1-like chaperonin intermediate domain
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7. Citations (1)