← Back to search
6lbe

Crystal structure of bony fish MHC class I binding beta2M-2 for 2.6 angstrom

Method: X-RAY DIFFRACTION
▼

1. Protein Identity and Related Structures Protein Identity & Related Structures

MHC class I antigen

Ctenopharyngodon idella

UniProt Q65XY8

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 3 Beta-2-microglobulin × 1 （A0A3G2VUI3） 9-mer peptide from RNA-DIRECTED RNA POLYMERASE L × 1 water × 3 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 3 Beta-2-microglobulin × 1 （A0A3G2VUI3） 9-mer peptide from RNA-DIRECTED RNA POLYMERASE L × 1 water × 3 Consistent with protein count

Other States of the Same Protein in the Database

Monomer

None

Homodimer

None

Homotetramer

None

Other homooligomers

None

Heteromeric or nucleic-acid complex
5h5z 5y91 6lbe 6lbe

4 assemblies

View Construct and Data Evidence
UniProt name Q65XY8_CTEID
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A； PDBConstruct 1–275； UniProt 17–291 Author chain C； PDBConstruct 1–275； UniProt 17–291

Beta-2-microglobulin

Ctenopharyngodon idella

UniProt A0A3G2VUI3

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 3 MHC class I antigen × 1 （Q65XY8） 9-mer peptide from RNA-DIRECTED RNA POLYMERASE L × 1 water × 3 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 3 MHC class I antigen × 1 （Q65XY8） 9-mer peptide from RNA-DIRECTED RNA POLYMERASE L × 1 water × 3 Consistent with protein count

Other States of the Same Protein in the Database

Monomer

None

Homodimer

None

Homotetramer

None

Other homooligomers

None

Heteromeric or nucleic-acid complex
6lbe 6lbe

2 assemblies

View Construct and Data Evidence
UniProt name A0A3G2VUI3_CTEID
Isoform —
PDB entities 2
Chains and sequence ranges Author chain B； PDBConstruct 2–99； UniProt 20–117 Author chain D； PDBConstruct 2–99； UniProt 20–117

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

▼

2. Structure Basics 2. Structure Basics

Entry ID entry_id6lbe
Deposition date deposition_date2019-11-14
Structure title titleCrystal structure of bony fish MHC class I binding beta2M-2 for 2.6 angstrom
Keywords keywordsImmunoglobulin-like, MHC class I, Peptide-binding protein, Antigen presentation, IMMUNE SYSTEM; IMMUNE SYSTEM
Experimental Method methodX-RAY DIFFRACTION
▼

3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

6lbe__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

6lbe__assembly_1__model_1 | I(q)

10-2 10-1 105 106 107 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

6lbe__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）24.23 Å
Rg (electron density)23.33 Å
Total Rg24.17 Å
Atom count3073
Residues381
Excluded volume54078 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 6lbe__assembly_1__model_1 trimeric （3） Success 4.1.3-1-20251215 (887e7ef) View Download
2 1 6lbe__assembly_2__model_1 trimeric （3） Success 4.1.3-1-20251215 (887e7ef) View Download
▶

4. Crystallography and Experiment 4. Crystallography & Experiment

▶

5. Entities and Polymers Entities & Polymers (4)

▶

7. Citations (1)