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6opc

Cdc48 Hexamer in a complex with substrate and Shp1(Ubx Domain)

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Cell division control protein 48

OrganismNot specified

UniProt P25694

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 8 Substrate bound to the central pore of the Cdc48 hexamer × 1 UBX domain-containing protein 1 × 1 （P34223） ADENOSINE-5'-DIPHOSPHATE × 10 BERYLLIUM TRIFLUORIDE ION × 8 MAGNESIUM ION × 8 Consistent with protein count

Other States of the Same Protein in the Database

Monomer

None

Homodimer

None

Homotetramer

None

Other homooligomers

None

Heteromeric or nucleic-acid complex
6oa9 6oaa 6oab 6omb 6opc 8dar 8das 8dat 8dau 8dav 8daw 8u7t

22 assemblies; showing the first 12

View Construct and Data Evidence
UniProt name CDC48_YEAST
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A； PDBConstruct 1–835； UniProt 1–835 Author chain B； PDBConstruct 1–835； UniProt 1–835 Author chain C； PDBConstruct 1–835； UniProt 1–835 Author chain D； PDBConstruct 1–835； UniProt 1–835 Author chain E； PDBConstruct 1–835； UniProt 1–835 Author chain F； PDBConstruct 1–835； UniProt 1–835

UBX domain-containing protein 1

OrganismNot specified

UniProt P34223

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 8 Cell division control protein 48 × 6 （P25694） Substrate bound to the central pore of the Cdc48 hexamer × 1 ADENOSINE-5'-DIPHOSPHATE × 10 BERYLLIUM TRIFLUORIDE ION × 8 MAGNESIUM ION × 8 Consistent with protein count

Other States of the Same Protein in the Database

Monomer

None

Homodimer

None

Homotetramer

None

Other homooligomers

None

Heteromeric or nucleic-acid complex
6opc 8ub4

2 assemblies

View Construct and Data Evidence
UniProt name UBX1_YEAST
Isoform —
PDB entities 3
Chains and sequence ranges Author chain Z； PDBConstruct 1–423； UniProt 1–423

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id6opc
Deposition date deposition_date2019-04-24
Structure title titleCdc48 Hexamer in a complex with substrate and Shp1(Ubx Domain)
Keywords keywordsCdc48, AAA+ ATPase, substrate translocation, MOTOR PROTEIN; MOTOR PROTEIN
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

6opc__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

6opc__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

6opc__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）54.17 Å
Rg (electron density)52.99 Å
Total Rg52.65 Å
Atom count30015
Residues4477
Excluded volume517720 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 6opc__assembly_1__model_1 octameric （8） Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (6)

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7. Citations (1)