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6p4k

mouse norovirus complexed with TCA

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Capsid protein

OrganismNot specified

UniProt Q2V8W4

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein homooligomer Homooligomer Protein 180 TAUROCHOLIC ACID × 360 Consistent with protein count
2 Protein homooligomer Homooligomer Protein 3 TAUROCHOLIC ACID × 6 Consistent with protein count
3 Protein homooligomer Homooligomer Protein 15 TAUROCHOLIC ACID × 30 Consistent with protein count
4 Protein homooligomer Homooligomer Protein 18 TAUROCHOLIC ACID × 36 Consistent with protein count
5 Protein homooligomer Homooligomer Protein 3 TAUROCHOLIC ACID × 6 Consistent with protein count

Other States of the Same Protein in the Database

Monomer

None

Homodimer
3lq6

1 assemblies

Homotetramer

None

Other homooligomers
6p4j 6p4j 6p4j 6p4j 6p4j 6p4k 6p4k 6p4k 6p4k 6p4k 6p4l 6p4l

18 assemblies; showing the first 12

Heteromeric or nucleic-acid complex
6crj 6crj 6crj 6crj 6crj 7l5j

6 assemblies

View Construct and Data Evidence
UniProt name Q2V8W4_9CALI
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A； PDBConstruct 1–516； UniProt 17–532 Author chain B； PDBConstruct 1–516； UniProt 17–532 Author chain C； PDBConstruct 1–516； UniProt 17–532

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id6p4k
Deposition date deposition_date2019-05-27
Structure title titlemouse norovirus complexed with TCA
Keywords keywordsnorovirus, bile salts, VIRUS; VIRUS
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

6p4k__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

6p4k__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 1010 1011 1012 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

6p4k__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）0.00 Å
Rg (electron density)162.10 Å
Total Rg162.10 Å
Atom count717780
Residues91740
Excluded volume12886000 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 6p4k__assembly_1__model_1 180-meric （180） Success 4.1.3-1-20251215 (887e7ef) View Download
2 1 6p4k__assembly_2__model_1 trimeric （3） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
3 1 6p4k__assembly_3__model_1 pentadecameric （15） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
4 1 6p4k__assembly_4__model_1 octadecameric （18） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
5 1 6p4k__assembly_5__model_1 trimeric （3） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (2)

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6. Fold Classification (SCOP + CATH) 12 domains

SCOP 2.08 (3 domains)

Domain ID domain_idd6p4ka_
Class classb — All beta proteins
Fold Fold foldb.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamilyb.121.4 — Positive stranded ssRNA viruses
Family Family familyb.121.4.0 — automated matches
Domain ID domain_idd6p4kb_
Class classb — All beta proteins
Fold Fold foldb.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamilyb.121.4 — Positive stranded ssRNA viruses
Family Family familyb.121.4.0 — automated matches
Domain ID domain_idd6p4kc_
Class classb — All beta proteins
Fold Fold foldb.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamilyb.121.4 — Positive stranded ssRNA viruses
Family Family familyb.121.4.0 — automated matches

CATH v4.4 (9 domains)

Domain ID domain_id6p4kA01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology120 — Jelly Rolls
Homologous superfamily homologous superfamily20 —
Domain ID domain_id6p4kA02
Class class2 — Mainly Beta
Architecture architecture40 — Beta Barrel
Topology topology510 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Homologous superfamily homologous superfamily10 — Positive stranded ssRNA viruses
Domain ID domain_id6p4kA03
Class class2 — Mainly Beta
Architecture architecture40 — Beta Barrel
Topology topology30 — Elongation Factor Tu (Ef-tu); domain 3
Homologous superfamily homologous superfamily120 — Positive stranded ssRNA viruses
Domain ID domain_id6p4kB01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology120 — Jelly Rolls
Homologous superfamily homologous superfamily20 —
Domain ID domain_id6p4kB02
Class class2 — Mainly Beta
Architecture architecture40 — Beta Barrel
Topology topology510 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Homologous superfamily homologous superfamily10 — Positive stranded ssRNA viruses
Domain ID domain_id6p4kB03
Class class2 — Mainly Beta
Architecture architecture40 — Beta Barrel
Topology topology30 — Elongation Factor Tu (Ef-tu); domain 3
Homologous superfamily homologous superfamily120 — Positive stranded ssRNA viruses
Domain ID domain_id6p4kC01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology120 — Jelly Rolls
Homologous superfamily homologous superfamily20 —
Domain ID domain_id6p4kC02
Class class2 — Mainly Beta
Architecture architecture40 — Beta Barrel
Topology topology510 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Homologous superfamily homologous superfamily10 — Positive stranded ssRNA viruses
Domain ID domain_id6p4kC03
Class class2 — Mainly Beta
Architecture architecture40 — Beta Barrel
Topology topology30 — Elongation Factor Tu (Ef-tu); domain 3
Homologous superfamily homologous superfamily120 — Positive stranded ssRNA viruses
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7. Citations (1)