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6q2v

Crystal structure of SPOC domain of human PHD-finger protein 3 (PHF3)

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

PHD finger protein 3

Homo sapiens

UniProt Q92576

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein monomer Monomer Protein 1 water × 1 Consistent with protein count
2 Protein monomer Monomer Protein 1 water × 1 Consistent with protein count
3 Protein monomer Monomer Protein 1 water × 1 Consistent with protein count
4 Protein monomer Monomer Protein 1 water × 1 Consistent with protein count
5 Protein monomer Monomer Protein 1 GLYCEROL × 1 water × 1 Consistent with protein count
6 Protein monomer Monomer Protein 1 GLYCEROL × 1 water × 1 Consistent with protein count
7 Protein monomer Monomer Protein 1 water × 1 Consistent with protein count
8 Protein monomer Monomer Protein 1 water × 1 Consistent with protein count

Other States of the Same Protein in the Database

Monomer
2dme 6q2v 6q2v 6q2v 6q2v 6q2v 6q2v 6q2v 6q2v 6q5y 6q5y

11 assemblies

Homodimer

None

Homotetramer

None

Other homooligomers

None

Heteromeric or nucleic-acid complex
6ic8 6ic8 6ic9 6ic9 6q5y 6q5y

6 assemblies

View Construct and Data Evidence
UniProt name PHF3_HUMAN
Isoform Q92576-2
PDB entities 1
Chains and sequence ranges Author chain A； PDBConstruct 5–162； UniProt 1111–1268 Author chain B； PDBConstruct 5–162； UniProt 1111–1268 Author chain C； PDBConstruct 5–162； UniProt 1111–1268 Author chain D； PDBConstruct 5–162； UniProt 1111–1268 Author chain E； PDBConstruct 5–162； UniProt 1111–1268 Author chain F； PDBConstruct 5–162； UniProt 1111–1268 Author chain G； PDBConstruct 5–162； UniProt 1111–1268 Author chain H； PDBConstruct 5–162； UniProt 1111–1268

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id6q2v
Deposition date deposition_date2018-12-03
Structure title titleCrystal structure of SPOC domain of human PHD-finger protein 3 (PHF3)
Keywords keywordsSPOC domain, PHF3, TRANSCRIPTION; TRANSCRIPTION
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

6q2v__assembly_2__model_1

Assembly 2 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

6q2v__assembly_2__model_1 | I(q)

10-2 10-1 105 106 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

6q2v__assembly_2__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）16.04 Å
Rg (electron density)14.59 Å
Total Rg15.86 Å
Atom count1181
Residues145
Excluded volume21447 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 6q2v__assembly_1__model_1 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
2 1 6q2v__assembly_2__model_1 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
3 1 6q2v__assembly_3__model_1 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
4 1 6q2v__assembly_4__model_1 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
5 1 6q2v__assembly_5__model_1 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
6 1 6q2v__assembly_6__model_1 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
7 1 6q2v__assembly_7__model_1 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
8 1 6q2v__assembly_8__model_1 monomeric （1） Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (3)

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7. Citations (2)