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6s6l

Cryo-EM structure of murine norovirus (MNV-1)

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Capsid protein

OrganismNot specified

UniProt Q2V8W4

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein homooligomer Homooligomer Protein 3 No other associated polymer Consistent with protein count

Other States of the Same Protein in the Database

Monomer

None

Homodimer
3lq6

1 assemblies

Homotetramer

None

Other homooligomers
6p4j 6p4j 6p4j 6p4j 6p4j 6p4k 6p4k 6p4k 6p4k 6p4k 6p4l 6p4l

18 assemblies; showing the first 12

Heteromeric or nucleic-acid complex
6crj 6crj 6crj 6crj 6crj 7l5j

6 assemblies

View Construct and Data Evidence
UniProt name Q2V8W4_9CALI
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A； PDBConstruct 1–541； UniProt 1–541 Author chain B； PDBConstruct 1–541； UniProt 1–541 Author chain C； PDBConstruct 1–541； UniProt 1–541

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id6s6l
Deposition date deposition_date2019-07-03
Structure title titleCryo-EM structure of murine norovirus (MNV-1)
Keywords keywordsNorovirus, Virus, Capsid, VP1; VIRUS
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

6s6l__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

6s6l__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

6s6l__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）36.99 Å
Rg (electron density)36.13 Å
Total Rg36.73 Å
Atom count11587
Residues1510
Excluded volume207460 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 6s6l__assembly_1__model_1 trimeric （3） Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (1)

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6. Fold Classification (SCOP + CATH) 4 domains

SCOP 2.08 (3 domains)

Domain ID domain_idd6s6la_
Class classb — All beta proteins
Fold Fold foldb.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamilyb.121.4 — Positive stranded ssRNA viruses
Family Family familyb.121.4.0 — automated matches
Domain ID domain_idd6s6lb_
Class classb — All beta proteins
Fold Fold foldb.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamilyb.121.4 — Positive stranded ssRNA viruses
Family Family familyb.121.4.0 — automated matches
Domain ID domain_idd6s6lc_
Class classb — All beta proteins
Fold Fold foldb.121 — Nucleoplasmin-like/VP (viral coat and capsid proteins)
Superfamily Superfamily superfamilyb.121.4 — Positive stranded ssRNA viruses
Family Family familyb.121.4.0 — automated matches

CATH v4.4 (1 domains)

Domain ID domain_id6s6lB01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology120 — Jelly Rolls
Homologous superfamily homologous superfamily20 —
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7. Citations (1)