6sdh

Human Carbonic Anhydrase II in complex with an inhibitor soaked at a concentration of 5 mM

Method: X-RAY DIFFRACTION Dmax: 58.5 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Carbonic anhydrase 2

Homo sapiens

UniProt P00918

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain A; UniProt 1–260 Not recorded ZN ZINC ION × 1 DMS DIMETHYL SULFOXIDE × 1 BE7 (4-CARBOXYPHENYL)(CHLORO)MERCURY × 1 HG MERCURY (II) ION × 1 0VV N-[(2E)-3,4-dihydroquinazolin-2(1H)-ylidene]sulfuric diamide × 1 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 7.8;291 K;Ammonium sulfate 2.7 M, TRIS 0.1 M, saturated with para-Chloromercuribenzoic acid Resolution 1.04 Å R-free 0.147

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

1239 other PDB entries and 1272 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name CAH2_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 6–265; UniProt 1–260

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 6sdh

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 6sdh
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2. Structure Basics 2. Structure Basics

Entry ID entry_id6sdh
Deposition date deposition_date2019-07-27
Structure title titleHuman Carbonic Anhydrase II in complex with an inhibitor soaked at a concentration of 5 mM
Keywords keywordsInhibitor, complex, CO2 conversion, LYASE; LYASE
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier18.39
Radius of gyration Rg (electron density) rg_electron17.10
Forward intensity I(0) i014529800.00
Molecular weight molecular_weight28574.0 kDa
Excluded volume excluded_volume35503 ų
Envelope volume envelope_volume39314 ų
Hydration-shell volume shell_volume18701 ų
Envelope diameter envelope_diameter59.2
Shell Rg shell_rg23.81
Envelope Rg envelope_rg17.46
Shape Rg shape_rg17.05
Total Rg total_rg18.25
Total atoms total_atoms3887
Residues n_residues257
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax58.5
Rg (real space) rg_real18.25
Rg uncertainty (real space) rg_real_error0.29
I(0) (real space) i0_real1.4530e+07
I(0) uncertainty (real space) i0_real_error1.6980e+05
Rg (reciprocal space) rg_reciprocal18.27
I(0) (reciprocal space) i0_reciprocal14530000.0000
Solution quality estimate total_estimate0.8868
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary23.7
Skewness Skewness skewness0.065
Kurtosis Kurtosis kurtosis-0.441
Angular range angular_range— – 0.4350 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha2100000.0000
Real-space data points n_real_points75
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.854; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.982; Smooth: 0.982

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (7)

7. Fold Classification (SCOP + CATH) 1 domains

SCOP 2.08 (1 domains)

Domain ID domain_idd6sdha_
Class classb — All beta proteins
Fold Fold foldb.74 — Carbonic anhydrase
Superfamily Superfamily superfamilyb.74.1 — Carbonic anhydrase
Family Family familyb.74.1.1 — Carbonic anhydrase

8. Citations (1)

9. Files and Curves (10)