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6u2v

AAV8 Baculovirus-Sf9 produced, full capsid

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Capsid protein

Adeno-associated virus - 8

UniProt Q8JQF8

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein homooligomer Homooligomer Protein 60 No other associated polymer Consistent with protein count
2 Protein monomer Monomer Protein 1 No other associated polymer Consistent with protein count
3 Protein homooligomer Homooligomer Protein 5 No other associated polymer Consistent with protein count
4 Protein homooligomer Homooligomer Protein 6 No other associated polymer Consistent with protein count
5 Protein monomer Monomer Protein 1 No other associated polymer Consistent with protein count

Other States of the Same Protein in the Database

Monomer
2qa0 2qa0 3ra2 3ra2 3ra8 3ra8 3raa 3raa 6pwa 6pwa 6u20 6u20

16 assemblies; showing the first 12

Homodimer

None

Homotetramer

None

Other homooligomers
2qa0 2qa0 2qa0 2qa0 3ra2 3ra2 3ra2 3ra2 3ra8 3ra8 3ra8 3ra8

33 assemblies; showing the first 12

Heteromeric or nucleic-acid complex
3ra4 3ra4 3ra4 3ra4 3ra4 3ra4 3ra9 3ra9 3ra9 3ra9 3ra9 3ra9

22 assemblies; showing the first 12

View Construct and Data Evidence
UniProt name Q8JQF8_9VIRU
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A； PDBConstruct 1–519； UniProt 220–738

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id6u2v
Deposition date deposition_date2019-08-20
Structure title titleAAV8 Baculovirus-Sf9 produced, full capsid
Keywords keywordsAdeno-associated virus, AAV, gene therapy vector, post translational modification, capsid, VIRUS; VIRUS
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

6u2v__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

6u2v__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 1010 1011 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

6u2v__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）0.00 Å
Rg (electron density)112.40 Å
Total Rg112.70 Å
Atom count248160
Residues31140
Excluded volume4340400 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 6u2v__assembly_1__model_1 60-meric （60） Success 4.1.3-1-20251215 (887e7ef) View Download
2 1 6u2v__assembly_2__model_1 monomeric （1） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
3 1 6u2v__assembly_3__model_1 pentameric （5） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
4 1 6u2v__assembly_4__model_1 hexameric （6） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
5 1 6u2v__assembly_5__model_1 monomeric （1） Excluded — —
Exclusion reason： Auxiliary symmetry representation; not a complete or representative biological assembly.
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (1)

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6. Fold Classification (SCOP + CATH) 1 domains

CATH v4.4 (1 domains)

Domain ID domain_id6u2vA00
Class class2 — Mainly Beta
Architecture architecture170 — Beta Complex
Topology topology30 — Empty Capsid Viral Protein 2
Homologous superfamily homologous superfamily10 — Parvovirus coat protein VP1/VP2
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7. Citations (1)