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6wau

Complex structure of PHF19

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

PHD finger protein 19

Homo sapiens

UniProt Q5T6S3

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 2 Histone H3.1t peptide × 1 （Q16695） UNKNOWN ATOM OR ION × 1 water × 2 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 2 Histone H3.1t peptide × 1 （Q16695） UNKNOWN ATOM OR ION × 4 water × 2 Consistent with protein count
3 Protein heterocomplex Heteromer Protein 2 Histone H3.1t peptide × 1 （Q16695） UNKNOWN ATOM OR ION × 2 water × 2 Consistent with protein count
4 Protein heterocomplex Heteromer Protein 2 Histone H3.1t peptide × 1 （Q16695） UNKNOWN ATOM OR ION × 4 water × 2 Consistent with protein count
5 Protein heterocomplex Heteromer Protein 2 Histone H3.1t peptide × 1 （Q16695） water × 1 Consistent with protein count
6 Protein heterocomplex Heteromer Protein 2 Histone H3.1t peptide × 1 （Q16695） water × 2 Consistent with protein count

Other States of the Same Protein in the Database

Monomer

None

Homodimer

None

Homotetramer

None

Other homooligomers

None

Heteromeric or nucleic-acid complex
4bd3 6nq3 6nq3 6wau 6wau 6wau 6wau 6wau 6wau 9xzi

10 assemblies

View Construct and Data Evidence
UniProt name PHF19_HUMAN
Isoform Q5T6S3-2
PDB entities 1
Chains and sequence ranges Author chain A； PDBConstruct 2–60； UniProt 38–96 Author chain B； PDBConstruct 2–60； UniProt 38–96 Author chain C； PDBConstruct 2–60； UniProt 38–96 Author chain D； PDBConstruct 2–60； UniProt 38–96 Author chain E； PDBConstruct 2–60； UniProt 38–96 Author chain F； PDBConstruct 2–60； UniProt 38–96

Histone H3.1t peptide

OrganismNot specified

UniProt Q16695

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 2 PHD finger protein 19 × 1 （Q5T6S3） UNKNOWN ATOM OR ION × 1 water × 2 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 2 PHD finger protein 19 × 1 （Q5T6S3） UNKNOWN ATOM OR ION × 4 water × 2 Consistent with protein count
3 Protein heterocomplex Heteromer Protein 2 PHD finger protein 19 × 1 （Q5T6S3） UNKNOWN ATOM OR ION × 2 water × 2 Consistent with protein count
4 Protein heterocomplex Heteromer Protein 2 PHD finger protein 19 × 1 （Q5T6S3） UNKNOWN ATOM OR ION × 4 water × 2 Consistent with protein count
5 Protein heterocomplex Heteromer Protein 2 PHD finger protein 19 × 1 （Q5T6S3） water × 1 Consistent with protein count
6 Protein heterocomplex Heteromer Protein 2 PHD finger protein 19 × 1 （Q5T6S3） water × 2 Consistent with protein count

Other States of the Same Protein in the Database

Monomer

None

Homodimer

None

Homotetramer

None

Other homooligomers

None

Heteromeric or nucleic-acid complex
2v1d 2ybp 2ybp 2ybs 2ybs 3a6n 3t6r 4a7j 4v2v 4v2v 4v2w 6oie

36 assemblies; showing the first 12

View Construct and Data Evidence
UniProt name H31T_HUMAN
Isoform —
PDB entities 2
Chains and sequence ranges Author chain G； PDBConstruct 1–12； UniProt 22–33 Author chain H； PDBConstruct 1–12； UniProt 22–33 Author chain I； PDBConstruct 1–12； UniProt 22–33 Author chain J； PDBConstruct 1–12； UniProt 22–33 Author chain K； PDBConstruct 1–12； UniProt 22–33 Author chain L； PDBConstruct 1–12； UniProt 22–33

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id6wau
Deposition date deposition_date2020-03-26
Structure title titleComplex structure of PHF19
Keywords keywordsPHF19, Tudor, histone variant, complex, Structural Genomics, Structural Genomics Consortium, SGC, GENE REGULATION; GENE REGULATION
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

6wau__assembly_6__model_1

Assembly 6 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

6wau__assembly_6__model_1 | I(q)

10-2 10-1 105 106 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

6wau__assembly_6__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）12.40 Å
Rg (electron density)10.88 Å
Total Rg12.46 Å
Atom count500
Residues62
Excluded volume8978 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 6wau__assembly_1__model_1 dimeric （2） Excluded — —
Exclusion reason： The source record does not identify the atom or ion element unambiguously, so a reliable calculation is not possible.
2 1 6wau__assembly_2__model_1 dimeric （2） Excluded — —
Exclusion reason： The source record does not identify the atom or ion element unambiguously, so a reliable calculation is not possible.
3 1 6wau__assembly_3__model_1 dimeric （2） Excluded — —
Exclusion reason： The source record does not identify the atom or ion element unambiguously, so a reliable calculation is not possible.
4 1 6wau__assembly_4__model_1 dimeric （2） Excluded — —
Exclusion reason： The source record does not identify the atom or ion element unambiguously, so a reliable calculation is not possible.
5 1 6wau__assembly_5__model_1 dimeric （2） Success 4.1.3-1-20251215 (887e7ef) View Download
6 1 6wau__assembly_6__model_1 dimeric （2） Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (4)

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7. Citations (1)