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6ynd

GAPDH purified from the supernatant of HEK293F cells: crystal form 1 of 4.

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Glyceraldehyde-3-phosphate dehydrogenase

OrganismNot specified

UniProt P04406

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein homooligomer Homooligomer Protein 4 3,6,9,12,15,18,21,24,27-NONAOXANONACOSANE-1,29-DIOL × 5 water × 4 Consistent with protein count
2 Protein homooligomer Homooligomer Protein 4 3,6,9,12,15,18,21,24,27-NONAOXANONACOSANE-1,29-DIOL × 8 water × 4 Consistent with protein count

Other States of the Same Protein in the Database

Monomer

None

Homodimer
6ade 6ade

2 assemblies

Homotetramer
1u8f 1znq 4wnc 4wnc 4wni 6iq6 6iq6 6m61 6ynd 6ynd 6yne 6ynf

23 assemblies; showing the first 12

Other homooligomers

None

Heteromeric or nucleic-acid complex

None

View Construct and Data Evidence
UniProt name G3P_HUMAN
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A； PDBConstruct 1–335； UniProt 1–335 Author chain B； PDBConstruct 1–335； UniProt 1–335 Author chain C； PDBConstruct 1–335； UniProt 1–335 Author chain D； PDBConstruct 1–335； UniProt 1–335 Author chain E； PDBConstruct 1–335； UniProt 1–335 Author chain F； PDBConstruct 1–335； UniProt 1–335 Author chain G； PDBConstruct 1–335； UniProt 1–335 Author chain H； PDBConstruct 1–335； UniProt 1–335

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id6ynd
Deposition date deposition_date2020-04-13
Structure title titleGAPDH purified from the supernatant of HEK293F cells: crystal form 1 of 4.
Keywords keywordsHEK293F, kifunensine, Cysteine-S-Sulfonic acid, BIOSYNTHETIC PROTEIN; BIOSYNTHETIC PROTEIN
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

6ynd__assembly_2__model_1

Assembly 2 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

6ynd__assembly_2__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

6ynd__assembly_2__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）32.95 Å
Rg (electron density)32.13 Å
Total Rg32.91 Å
Atom count20474
Residues1330
Excluded volume182500 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 6ynd__assembly_1__model_1 tetrameric （4） Success 4.1.3-1-20251215 (887e7ef) View Download
2 1 6ynd__assembly_2__model_1 tetrameric （4） Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (3)

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7. Citations (1)