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6yq5

Hybrid structure of the SPP1 tail tube by solid-state NMR and cryo EM - NMR Ensemble

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1. Protein Identity and Related Structures Protein Identity & Related Structures

Tail tube protein gp17.1*

Bacillus phage SPP1

UniProt O48449

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein homooligomer Homooligomer Protein 12 No other associated polymer Consistent with protein count

Other States of the Same Protein in the Database

Monomer

None

Homodimer

None

Homotetramer

None

Other homooligomers
6yeg 6yq5

2 assemblies

Heteromeric or nucleic-acid complex
5a20 5a21

2 assemblies

View Construct and Data Evidence
UniProt name TUBE_BPSPP
Isoform O48449-2
PDB entities 1
Chains and sequence ranges Author chain A； PDBConstruct 1–172； UniProt 5–176 Author chain B； PDBConstruct 1–172； UniProt 5–176 Author chain C； PDBConstruct 1–172； UniProt 5–176 Author chain D； PDBConstruct 1–172； UniProt 5–176 Author chain E； PDBConstruct 1–172； UniProt 5–176 Author chain F； PDBConstruct 1–172； UniProt 5–176 Author chain G； PDBConstruct 1–172； UniProt 5–176 Author chain H； PDBConstruct 1–172； UniProt 5–176 Author chain I； PDBConstruct 1–172； UniProt 5–176 Author chain J； PDBConstruct 1–172； UniProt 5–176 Author chain K； PDBConstruct 1–172； UniProt 5–176 Author chain L； PDBConstruct 1–172； UniProt 5–176

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id6yq5
Deposition date deposition_date2020-04-16
Structure title titleHybrid structure of the SPP1 tail tube by solid-state NMR and cryo EM - NMR Ensemble
Keywords keywordscomplex, tail tube, scaffolding, DNA transport, VIRAL PROTEIN; VIRAL PROTEIN
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

6yq5__assembly_1__model_6

Assembly 1 · Model 6 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

6yq5__assembly_1__model_6 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

6yq5__assembly_1__model_6 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）41.42 Å
Rg (electron density)40.80 Å
Total Rg41.29 Å
Atom count30672
Residues2064
Excluded volume275850 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 6yq5__assembly_1__model_1 dodecameric （12） Success 4.1.3-1-20251215 (887e7ef) View Download
1 2 6yq5__assembly_1__model_2 dodecameric （12） Success 4.1.3-1-20251215 (887e7ef) View Download
1 3 6yq5__assembly_1__model_3 dodecameric （12） Success 4.1.3-1-20251215 (887e7ef) View Download
1 4 6yq5__assembly_1__model_4 dodecameric （12） Success 4.1.3-1-20251215 (887e7ef) View Download
1 5 6yq5__assembly_1__model_5 dodecameric （12） Success 4.1.3-1-20251215 (887e7ef) View Download
1 6 6yq5__assembly_1__model_6 dodecameric （12） Success 4.1.3-1-20251215 (887e7ef) View Download
1 7 6yq5__assembly_1__model_7 dodecameric （12） Success 4.1.3-1-20251215 (887e7ef) View Download
1 8 6yq5__assembly_1__model_8 dodecameric （12） Success 4.1.3-1-20251215 (887e7ef) View Download
1 9 6yq5__assembly_1__model_9 dodecameric （12） Success 4.1.3-1-20251215 (887e7ef) View Download
1 10 6yq5__assembly_1__model_10 dodecameric （12） Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (1)

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7. Citations (2)