7ewk

Barley photosystem I-LHCI-Lhca6 supercomplex

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Photosystem I P700 chlorophyll a apoprotein A1

OrganismNot specified

UniProt S4Z1K7

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 15 Photosystem I P700 chlorophyll a apoprotein A2 × 1 (S4Z289) Photosystem I iron-sulfur center × 1 Photosystem I reaction center subunit D × 1 Photosystem I reaction center subunit E × 1 Photosystem I reaction center subunit F × 1 Photosystem I reaction center subunit H × 1 Photosystem I reaction center subunit VIII × 1 (S4Z1D9) Photosystem I reaction center subunit IX × 1 (S4Z1E9) Photosystem I reaction center subunit K × 1 Photosystem I reaction center subunit L × 1 Chlorophyll a-b binding protein Lhca1 × 1 Chlorophyll a-b binding protein Lhca3 × 1 Chlorophyll a-b binding protein, chloroplastic × 1 (Q9LKC7) Chlorophyll a-b binding protein Lhca6 × 1 CHLOROPHYLL A ISOMER × 1 CHLOROPHYLL A × 137 PHYLLOQUINONE × 2 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 5 BETA-CAROTENE × 25 IRON/SULFUR CLUSTER × 3 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 2 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 2 (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 6 CHLOROPHYLL B × 11 ;(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL ; × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name S4Z1K7_HORVS
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–742; UniProt 9–750

Photosystem I P700 chlorophyll a apoprotein A2

OrganismNot specified

UniProt S4Z289

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 15 Photosystem I P700 chlorophyll a apoprotein A1 × 1 (S4Z1K7) Photosystem I iron-sulfur center × 1 Photosystem I reaction center subunit D × 1 Photosystem I reaction center subunit E × 1 Photosystem I reaction center subunit F × 1 Photosystem I reaction center subunit H × 1 Photosystem I reaction center subunit VIII × 1 (S4Z1D9) Photosystem I reaction center subunit IX × 1 (S4Z1E9) Photosystem I reaction center subunit K × 1 Photosystem I reaction center subunit L × 1 Chlorophyll a-b binding protein Lhca1 × 1 Chlorophyll a-b binding protein Lhca3 × 1 Chlorophyll a-b binding protein, chloroplastic × 1 (Q9LKC7) Chlorophyll a-b binding protein Lhca6 × 1 CHLOROPHYLL A ISOMER × 1 CHLOROPHYLL A × 137 PHYLLOQUINONE × 2 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 5 BETA-CAROTENE × 25 IRON/SULFUR CLUSTER × 3 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 2 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 2 (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 6 CHLOROPHYLL B × 11 ;(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL ; × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name S4Z289_HORVS
Isoform —
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–733; UniProt 2–734

Photosystem I reaction center subunit VIII

OrganismNot specified

UniProt S4Z1D9

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 15 Photosystem I P700 chlorophyll a apoprotein A1 × 1 (S4Z1K7) Photosystem I P700 chlorophyll a apoprotein A2 × 1 (S4Z289) Photosystem I iron-sulfur center × 1 Photosystem I reaction center subunit D × 1 Photosystem I reaction center subunit E × 1 Photosystem I reaction center subunit F × 1 Photosystem I reaction center subunit H × 1 Photosystem I reaction center subunit IX × 1 (S4Z1E9) Photosystem I reaction center subunit K × 1 Photosystem I reaction center subunit L × 1 Chlorophyll a-b binding protein Lhca1 × 1 Chlorophyll a-b binding protein Lhca3 × 1 Chlorophyll a-b binding protein, chloroplastic × 1 (Q9LKC7) Chlorophyll a-b binding protein Lhca6 × 1 CHLOROPHYLL A ISOMER × 1 CHLOROPHYLL A × 137 PHYLLOQUINONE × 2 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 5 BETA-CAROTENE × 25 IRON/SULFUR CLUSTER × 3 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 2 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 2 (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 6 CHLOROPHYLL B × 11 ;(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL ; × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name S4Z1D9_HORVS
Isoform —
PDB entities 8
Chains and sequence ranges Author chain I; PDBConstruct 1–30; UniProt 5–34

Photosystem I reaction center subunit IX

OrganismNot specified

UniProt S4Z1E9

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 15 Photosystem I P700 chlorophyll a apoprotein A1 × 1 (S4Z1K7) Photosystem I P700 chlorophyll a apoprotein A2 × 1 (S4Z289) Photosystem I iron-sulfur center × 1 Photosystem I reaction center subunit D × 1 Photosystem I reaction center subunit E × 1 Photosystem I reaction center subunit F × 1 Photosystem I reaction center subunit H × 1 Photosystem I reaction center subunit VIII × 1 (S4Z1D9) Photosystem I reaction center subunit K × 1 Photosystem I reaction center subunit L × 1 Chlorophyll a-b binding protein Lhca1 × 1 Chlorophyll a-b binding protein Lhca3 × 1 Chlorophyll a-b binding protein, chloroplastic × 1 (Q9LKC7) Chlorophyll a-b binding protein Lhca6 × 1 CHLOROPHYLL A ISOMER × 1 CHLOROPHYLL A × 137 PHYLLOQUINONE × 2 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 5 BETA-CAROTENE × 25 IRON/SULFUR CLUSTER × 3 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 2 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 2 (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 6 CHLOROPHYLL B × 11 ;(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL ; × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name S4Z1E9_HORVS
Isoform —
PDB entities 9
Chains and sequence ranges Author chain J; PDBConstruct 1–42; UniProt 1–42

Chlorophyll a-b binding protein, chloroplastic

OrganismNot specified

UniProt Q9LKC7

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 15 Photosystem I P700 chlorophyll a apoprotein A1 × 1 (S4Z1K7) Photosystem I P700 chlorophyll a apoprotein A2 × 1 (S4Z289) Photosystem I iron-sulfur center × 1 Photosystem I reaction center subunit D × 1 Photosystem I reaction center subunit E × 1 Photosystem I reaction center subunit F × 1 Photosystem I reaction center subunit H × 1 Photosystem I reaction center subunit VIII × 1 (S4Z1D9) Photosystem I reaction center subunit IX × 1 (S4Z1E9) Photosystem I reaction center subunit K × 1 Photosystem I reaction center subunit L × 1 Chlorophyll a-b binding protein Lhca1 × 1 Chlorophyll a-b binding protein Lhca3 × 1 Chlorophyll a-b binding protein Lhca6 × 1 CHLOROPHYLL A ISOMER × 1 CHLOROPHYLL A × 137 PHYLLOQUINONE × 2 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 5 BETA-CAROTENE × 25 IRON/SULFUR CLUSTER × 3 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 2 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 2 (3R,3'R,6S)-4,5-DIDEHYDRO-5,6-DIHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL × 6 CHLOROPHYLL B × 11 ;(3S,5R,6S,3'S,5'R,6'S)-5,6,5',6'-DIEPOXY-5,6,5',6'- TETRAHYDRO-BETA,BETA-CAROTENE-3,3'-DIOL ; × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name Q9LKC7_HORVU
Isoform —
PDB entities 14
Chains and sequence ranges Author chain 4; PDBConstruct 1–197; UniProt 29–225

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id7ewk
Deposition date deposition_date2021-05-25
Structure title titleBarley photosystem I-LHCI-Lhca6 supercomplex
Keywords keywordsPhotosystem I, Light-harvesting complex, Lhca6, cyclic electron transport, Photosynthesis; PHOTOSYNTHESIS
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

7ewk__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

7ewk__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

7ewk__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)51.80 Å
Rg (electron density)51.37 Å
Total Rg51.55 Å
Atom count32765
Residues3110
Excluded volume601800 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 7ewk__assembly_1__model_1 pentadecameric (15) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (26)

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6. Fold Classification (SCOP + CATH) 5 domains

CATH v4.4 (5 domains)

Domain ID domain_id7ewk101
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3460 — Chlorophyll a-b binding protein
Homologous superfamily homologous superfamily10 — Chlorophyll a/b binding protein domain
Domain ID domain_id7ewk301
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3460 — Chlorophyll a-b binding protein
Homologous superfamily homologous superfamily10 — Chlorophyll a/b binding protein domain
Domain ID domain_id7ewk401
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3460 — Chlorophyll a-b binding protein
Homologous superfamily homologous superfamily10 — Chlorophyll a/b binding protein domain
Domain ID domain_id7ewk601
Class class1 — Mainly Alpha
Architecture architecture10 — Orthogonal Bundle
Topology topology3460 — Chlorophyll a-b binding protein
Homologous superfamily homologous superfamily10 — Chlorophyll a/b binding protein domain
Domain ID domain_id7ewkL01
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology1240 — Photosystem 1 Reaction Centre Subunit Xi; Chain: L;
Homologous superfamily homologous superfamily10 — Photosystem I PsaL, reaction centre subunit XI
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7. Citations (1)