7f3p

Crystal structure of a nadp-dependent alcohol dehydrogenase mutant in apo form

Method: X-RAY DIFFRACTION Dmax: 99.9 Å Quality: EXCELLENT

1. Protein Identity and Related Structures Protein Identity & Related Structures

NADP-dependent isopropanol dehydrogenase

Thermoanaerobacter brockii

UniProt P14941

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein homooligomer Homooligomer Protein × 4 PDB declaration: tetrameric(4) Consistent with protein copy count Chain A; UniProt 1–352 Chain B; UniProt 1–352 Chain C; UniProt 1–352 Chain D; UniProt 1–352 Mutation:P84S, I86L ZN ZINC ION × 4 NAP NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE × 1 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, SITTING DROP;pH 8;295 K;PEG3350, NH4, citrate Resolution 2.60 Å R-free 0.237

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

13 other PDB entries and 15 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name ADH_THEBR
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 7–358; UniProt 1–352 Author chain B; PDBConstruct 7–358; UniProt 1–352 Author chain C; PDBConstruct 7–358; UniProt 1–352 Author chain D; PDBConstruct 7–358; UniProt 1–352

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 7f3p

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 7f3p
Download Download

2. Structure Basics 2. Structure Basics

Entry ID entry_id7f3p
Deposition date deposition_date2021-06-16
Structure title titleCrystal structure of a nadp-dependent alcohol dehydrogenase mutant in apo form
Keywords keywordsalpha/beta dehydrogenase, OXIDOREDUCTASE; OXIDOREDUCTASE
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier33.05
Radius of gyration Rg (electron density) rg_electron32.40
Forward intensity I(0) i0346083000.00
Molecular weight molecular_weight152500.0 kDa
Excluded volume excluded_volume192060 ų
Envelope volume envelope_volume228790 ų
Hydration-shell volume shell_volume56254 ų
Envelope diameter envelope_diameter105.4
Shell Rg shell_rg41.22
Envelope Rg envelope_rg32.31
Shape Rg shape_rg32.43
Total Rg total_rg32.96
Total atoms total_atoms10690
Residues n_residues1415
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax99.9
Rg (real space) rg_real32.78
Rg uncertainty (real space) rg_real_error0.46
I(0) (real space) i0_real3.4610e+08
I(0) uncertainty (real space) i0_real_error5.0110e+06
Rg (reciprocal space) rg_reciprocal32.90
I(0) (reciprocal space) i0_reciprocal346100000.0000
Solution quality estimate total_estimate0.9025
Solution quality rating solution_quality EXCELLENT a EXCELLENT solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary43.7
Skewness Skewness skewness0.096
Kurtosis Kurtosis kurtosis-0.532
Angular range angular_range— – 0.2400 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha161100000.0000
Real-space data points n_real_points49
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.940; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.978; Smooth: 0.932

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (4)

8. Citations (1)

9. Files and Curves (10)