7m75

Room Temperature XFEL Crystallography reveals asymmetry in the vicinity of the two phylloquinones in Photosystem I

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Photosystem I P700 chlorophyll a apoprotein A1

OrganismNot specified

UniProt P0A405

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 12 Photosystem I P700 chlorophyll a apoprotein A2 × 1 (P0A407) Photosystem I iron-sulfur center × 1 (P0A415) Photosystem I reaction center subunit II × 1 (P0A420) Photosystem I reaction center subunit IV × 1 (P0A423) Photosystem I reaction center subunit III × 1 (P0A401) Photosystem I reaction center subunit VIII × 1 (P0A427) Photosystem I reaction center subunit IX × 1 (P0A429) Photosystem I reaction center subunit PsaK × 1 (P0A425) Photosystem I reaction center subunit XI × 1 (Q8DGB4) Photosystem I reaction center subunit XII × 1 (P0A403) Photosystem I 4.8K protein × 1 (Q8DKP6) CHLOROPHYLL A ISOMER × 1 CHLOROPHYLL A × 95 PHYLLOQUINONE × 2 BETA-CAROTENE × 22 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 4 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 4 IRON/SULFUR CLUSTER × 3 CALCIUM ION × 2 DODECYL-BETA-D-MALTOSIDE × 1 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 1 water × 10 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 30 Photosystem I P700 chlorophyll a apoprotein A2 × 3 (P0A407) Photosystem I iron-sulfur center × 3 (P0A415) Photosystem I reaction center subunit II × 3 (P0A420) Photosystem I reaction center subunit III × 3 (P0A401) Photosystem I reaction center subunit VIII × 3 (P0A427) Photosystem I reaction center subunit IX × 3 (P0A429) Photosystem I reaction center subunit XI × 3 (Q8DGB4) Photosystem I reaction center subunit XII × 3 (P0A403) Photosystem I 4.8K protein × 3 (Q8DKP6) CHLOROPHYLL A ISOMER × 3 CHLOROPHYLL A × 279 PHYLLOQUINONE × 6 BETA-CAROTENE × 63 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 12 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 12 IRON/SULFUR CLUSTER × 9 CALCIUM ION × 6 DODECYL-BETA-D-MALTOSIDE × 3 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 3 water × 27 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSAA_THEEB
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–755; UniProt 1–755

Photosystem I P700 chlorophyll a apoprotein A2

OrganismNot specified

UniProt P0A407

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 12 Photosystem I P700 chlorophyll a apoprotein A1 × 1 (P0A405) Photosystem I iron-sulfur center × 1 (P0A415) Photosystem I reaction center subunit II × 1 (P0A420) Photosystem I reaction center subunit IV × 1 (P0A423) Photosystem I reaction center subunit III × 1 (P0A401) Photosystem I reaction center subunit VIII × 1 (P0A427) Photosystem I reaction center subunit IX × 1 (P0A429) Photosystem I reaction center subunit PsaK × 1 (P0A425) Photosystem I reaction center subunit XI × 1 (Q8DGB4) Photosystem I reaction center subunit XII × 1 (P0A403) Photosystem I 4.8K protein × 1 (Q8DKP6) CHLOROPHYLL A ISOMER × 1 CHLOROPHYLL A × 95 PHYLLOQUINONE × 2 BETA-CAROTENE × 22 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 4 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 4 IRON/SULFUR CLUSTER × 3 CALCIUM ION × 2 DODECYL-BETA-D-MALTOSIDE × 1 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 1 water × 10 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 30 Photosystem I P700 chlorophyll a apoprotein A1 × 3 (P0A405) Photosystem I iron-sulfur center × 3 (P0A415) Photosystem I reaction center subunit II × 3 (P0A420) Photosystem I reaction center subunit III × 3 (P0A401) Photosystem I reaction center subunit VIII × 3 (P0A427) Photosystem I reaction center subunit IX × 3 (P0A429) Photosystem I reaction center subunit XI × 3 (Q8DGB4) Photosystem I reaction center subunit XII × 3 (P0A403) Photosystem I 4.8K protein × 3 (Q8DKP6) CHLOROPHYLL A ISOMER × 3 CHLOROPHYLL A × 279 PHYLLOQUINONE × 6 BETA-CAROTENE × 63 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 12 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 12 IRON/SULFUR CLUSTER × 9 CALCIUM ION × 6 DODECYL-BETA-D-MALTOSIDE × 3 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 3 water × 27 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSAB_THEEB
Isoform —
PDB entities 2
Chains and sequence ranges Author chain B; PDBConstruct 1–740; UniProt 2–741

Photosystem I iron-sulfur center

OrganismNot specified

UniProt P0A415

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 12 Photosystem I P700 chlorophyll a apoprotein A1 × 1 (P0A405) Photosystem I P700 chlorophyll a apoprotein A2 × 1 (P0A407) Photosystem I reaction center subunit II × 1 (P0A420) Photosystem I reaction center subunit IV × 1 (P0A423) Photosystem I reaction center subunit III × 1 (P0A401) Photosystem I reaction center subunit VIII × 1 (P0A427) Photosystem I reaction center subunit IX × 1 (P0A429) Photosystem I reaction center subunit PsaK × 1 (P0A425) Photosystem I reaction center subunit XI × 1 (Q8DGB4) Photosystem I reaction center subunit XII × 1 (P0A403) Photosystem I 4.8K protein × 1 (Q8DKP6) CHLOROPHYLL A ISOMER × 1 CHLOROPHYLL A × 95 PHYLLOQUINONE × 2 BETA-CAROTENE × 22 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 4 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 4 IRON/SULFUR CLUSTER × 3 CALCIUM ION × 2 DODECYL-BETA-D-MALTOSIDE × 1 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 1 water × 10 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 30 Photosystem I P700 chlorophyll a apoprotein A1 × 3 (P0A405) Photosystem I P700 chlorophyll a apoprotein A2 × 3 (P0A407) Photosystem I reaction center subunit II × 3 (P0A420) Photosystem I reaction center subunit III × 3 (P0A401) Photosystem I reaction center subunit VIII × 3 (P0A427) Photosystem I reaction center subunit IX × 3 (P0A429) Photosystem I reaction center subunit XI × 3 (Q8DGB4) Photosystem I reaction center subunit XII × 3 (P0A403) Photosystem I 4.8K protein × 3 (Q8DKP6) CHLOROPHYLL A ISOMER × 3 CHLOROPHYLL A × 279 PHYLLOQUINONE × 6 BETA-CAROTENE × 63 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 12 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 12 IRON/SULFUR CLUSTER × 9 CALCIUM ION × 6 DODECYL-BETA-D-MALTOSIDE × 3 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 3 water × 27 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSAC_THEEB
Isoform —
PDB entities 3
Chains and sequence ranges Author chain C; PDBConstruct 1–80; UniProt 2–81

Photosystem I reaction center subunit II

OrganismNot specified

UniProt P0A420

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 12 Photosystem I P700 chlorophyll a apoprotein A1 × 1 (P0A405) Photosystem I P700 chlorophyll a apoprotein A2 × 1 (P0A407) Photosystem I iron-sulfur center × 1 (P0A415) Photosystem I reaction center subunit IV × 1 (P0A423) Photosystem I reaction center subunit III × 1 (P0A401) Photosystem I reaction center subunit VIII × 1 (P0A427) Photosystem I reaction center subunit IX × 1 (P0A429) Photosystem I reaction center subunit PsaK × 1 (P0A425) Photosystem I reaction center subunit XI × 1 (Q8DGB4) Photosystem I reaction center subunit XII × 1 (P0A403) Photosystem I 4.8K protein × 1 (Q8DKP6) CHLOROPHYLL A ISOMER × 1 CHLOROPHYLL A × 95 PHYLLOQUINONE × 2 BETA-CAROTENE × 22 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 4 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 4 IRON/SULFUR CLUSTER × 3 CALCIUM ION × 2 DODECYL-BETA-D-MALTOSIDE × 1 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 1 water × 10 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 30 Photosystem I P700 chlorophyll a apoprotein A1 × 3 (P0A405) Photosystem I P700 chlorophyll a apoprotein A2 × 3 (P0A407) Photosystem I iron-sulfur center × 3 (P0A415) Photosystem I reaction center subunit III × 3 (P0A401) Photosystem I reaction center subunit VIII × 3 (P0A427) Photosystem I reaction center subunit IX × 3 (P0A429) Photosystem I reaction center subunit XI × 3 (Q8DGB4) Photosystem I reaction center subunit XII × 3 (P0A403) Photosystem I 4.8K protein × 3 (Q8DKP6) CHLOROPHYLL A ISOMER × 3 CHLOROPHYLL A × 279 PHYLLOQUINONE × 6 BETA-CAROTENE × 63 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 12 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 12 IRON/SULFUR CLUSTER × 9 CALCIUM ION × 6 DODECYL-BETA-D-MALTOSIDE × 3 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 3 water × 27 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSAD_THEEB
Isoform —
PDB entities 4
Chains and sequence ranges Author chain D; PDBConstruct 1–138; UniProt 2–139

Photosystem I reaction center subunit IV

OrganismNot specified

UniProt P0A423

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 12 Photosystem I P700 chlorophyll a apoprotein A1 × 1 (P0A405) Photosystem I P700 chlorophyll a apoprotein A2 × 1 (P0A407) Photosystem I iron-sulfur center × 1 (P0A415) Photosystem I reaction center subunit II × 1 (P0A420) Photosystem I reaction center subunit III × 1 (P0A401) Photosystem I reaction center subunit VIII × 1 (P0A427) Photosystem I reaction center subunit IX × 1 (P0A429) Photosystem I reaction center subunit PsaK × 1 (P0A425) Photosystem I reaction center subunit XI × 1 (Q8DGB4) Photosystem I reaction center subunit XII × 1 (P0A403) Photosystem I 4.8K protein × 1 (Q8DKP6) CHLOROPHYLL A ISOMER × 1 CHLOROPHYLL A × 95 PHYLLOQUINONE × 2 BETA-CAROTENE × 22 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 4 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 4 IRON/SULFUR CLUSTER × 3 CALCIUM ION × 2 DODECYL-BETA-D-MALTOSIDE × 1 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 1 water × 10 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSAE_THEEB
Isoform —
PDB entities 5
Chains and sequence ranges Author chain E; PDBConstruct 1–75; UniProt 2–76

Photosystem I reaction center subunit III

OrganismNot specified

UniProt P0A401

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 12 Photosystem I P700 chlorophyll a apoprotein A1 × 1 (P0A405) Photosystem I P700 chlorophyll a apoprotein A2 × 1 (P0A407) Photosystem I iron-sulfur center × 1 (P0A415) Photosystem I reaction center subunit II × 1 (P0A420) Photosystem I reaction center subunit IV × 1 (P0A423) Photosystem I reaction center subunit VIII × 1 (P0A427) Photosystem I reaction center subunit IX × 1 (P0A429) Photosystem I reaction center subunit PsaK × 1 (P0A425) Photosystem I reaction center subunit XI × 1 (Q8DGB4) Photosystem I reaction center subunit XII × 1 (P0A403) Photosystem I 4.8K protein × 1 (Q8DKP6) CHLOROPHYLL A ISOMER × 1 CHLOROPHYLL A × 95 PHYLLOQUINONE × 2 BETA-CAROTENE × 22 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 4 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 4 IRON/SULFUR CLUSTER × 3 CALCIUM ION × 2 DODECYL-BETA-D-MALTOSIDE × 1 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 1 water × 10 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 30 Photosystem I P700 chlorophyll a apoprotein A1 × 3 (P0A405) Photosystem I P700 chlorophyll a apoprotein A2 × 3 (P0A407) Photosystem I iron-sulfur center × 3 (P0A415) Photosystem I reaction center subunit II × 3 (P0A420) Photosystem I reaction center subunit VIII × 3 (P0A427) Photosystem I reaction center subunit IX × 3 (P0A429) Photosystem I reaction center subunit XI × 3 (Q8DGB4) Photosystem I reaction center subunit XII × 3 (P0A403) Photosystem I 4.8K protein × 3 (Q8DKP6) CHLOROPHYLL A ISOMER × 3 CHLOROPHYLL A × 279 PHYLLOQUINONE × 6 BETA-CAROTENE × 63 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 12 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 12 IRON/SULFUR CLUSTER × 9 CALCIUM ION × 6 DODECYL-BETA-D-MALTOSIDE × 3 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 3 water × 27 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSAF_THEEB
Isoform —
PDB entities 6
Chains and sequence ranges Author chain F; PDBConstruct 1–164; UniProt 1–164

Photosystem I reaction center subunit VIII

OrganismNot specified

UniProt P0A427

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 12 Photosystem I P700 chlorophyll a apoprotein A1 × 1 (P0A405) Photosystem I P700 chlorophyll a apoprotein A2 × 1 (P0A407) Photosystem I iron-sulfur center × 1 (P0A415) Photosystem I reaction center subunit II × 1 (P0A420) Photosystem I reaction center subunit IV × 1 (P0A423) Photosystem I reaction center subunit III × 1 (P0A401) Photosystem I reaction center subunit IX × 1 (P0A429) Photosystem I reaction center subunit PsaK × 1 (P0A425) Photosystem I reaction center subunit XI × 1 (Q8DGB4) Photosystem I reaction center subunit XII × 1 (P0A403) Photosystem I 4.8K protein × 1 (Q8DKP6) CHLOROPHYLL A ISOMER × 1 CHLOROPHYLL A × 95 PHYLLOQUINONE × 2 BETA-CAROTENE × 22 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 4 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 4 IRON/SULFUR CLUSTER × 3 CALCIUM ION × 2 DODECYL-BETA-D-MALTOSIDE × 1 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 1 water × 10 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 30 Photosystem I P700 chlorophyll a apoprotein A1 × 3 (P0A405) Photosystem I P700 chlorophyll a apoprotein A2 × 3 (P0A407) Photosystem I iron-sulfur center × 3 (P0A415) Photosystem I reaction center subunit II × 3 (P0A420) Photosystem I reaction center subunit III × 3 (P0A401) Photosystem I reaction center subunit IX × 3 (P0A429) Photosystem I reaction center subunit XI × 3 (Q8DGB4) Photosystem I reaction center subunit XII × 3 (P0A403) Photosystem I 4.8K protein × 3 (Q8DKP6) CHLOROPHYLL A ISOMER × 3 CHLOROPHYLL A × 279 PHYLLOQUINONE × 6 BETA-CAROTENE × 63 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 12 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 12 IRON/SULFUR CLUSTER × 9 CALCIUM ION × 6 DODECYL-BETA-D-MALTOSIDE × 3 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 3 water × 27 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSAI_THEEB
Isoform —
PDB entities 7
Chains and sequence ranges Author chain I; PDBConstruct 1–38; UniProt 1–38

Photosystem I reaction center subunit IX

OrganismNot specified

UniProt P0A429

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 12 Photosystem I P700 chlorophyll a apoprotein A1 × 1 (P0A405) Photosystem I P700 chlorophyll a apoprotein A2 × 1 (P0A407) Photosystem I iron-sulfur center × 1 (P0A415) Photosystem I reaction center subunit II × 1 (P0A420) Photosystem I reaction center subunit IV × 1 (P0A423) Photosystem I reaction center subunit III × 1 (P0A401) Photosystem I reaction center subunit VIII × 1 (P0A427) Photosystem I reaction center subunit PsaK × 1 (P0A425) Photosystem I reaction center subunit XI × 1 (Q8DGB4) Photosystem I reaction center subunit XII × 1 (P0A403) Photosystem I 4.8K protein × 1 (Q8DKP6) CHLOROPHYLL A ISOMER × 1 CHLOROPHYLL A × 95 PHYLLOQUINONE × 2 BETA-CAROTENE × 22 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 4 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 4 IRON/SULFUR CLUSTER × 3 CALCIUM ION × 2 DODECYL-BETA-D-MALTOSIDE × 1 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 1 water × 10 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 30 Photosystem I P700 chlorophyll a apoprotein A1 × 3 (P0A405) Photosystem I P700 chlorophyll a apoprotein A2 × 3 (P0A407) Photosystem I iron-sulfur center × 3 (P0A415) Photosystem I reaction center subunit II × 3 (P0A420) Photosystem I reaction center subunit III × 3 (P0A401) Photosystem I reaction center subunit VIII × 3 (P0A427) Photosystem I reaction center subunit XI × 3 (Q8DGB4) Photosystem I reaction center subunit XII × 3 (P0A403) Photosystem I 4.8K protein × 3 (Q8DKP6) CHLOROPHYLL A ISOMER × 3 CHLOROPHYLL A × 279 PHYLLOQUINONE × 6 BETA-CAROTENE × 63 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 12 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 12 IRON/SULFUR CLUSTER × 9 CALCIUM ION × 6 DODECYL-BETA-D-MALTOSIDE × 3 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 3 water × 27 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSAJ_THEEB
Isoform —
PDB entities 8
Chains and sequence ranges Author chain J; PDBConstruct 1–41; UniProt 1–41

Photosystem I reaction center subunit PsaK

OrganismNot specified

UniProt P0A425

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 12 Photosystem I P700 chlorophyll a apoprotein A1 × 1 (P0A405) Photosystem I P700 chlorophyll a apoprotein A2 × 1 (P0A407) Photosystem I iron-sulfur center × 1 (P0A415) Photosystem I reaction center subunit II × 1 (P0A420) Photosystem I reaction center subunit IV × 1 (P0A423) Photosystem I reaction center subunit III × 1 (P0A401) Photosystem I reaction center subunit VIII × 1 (P0A427) Photosystem I reaction center subunit IX × 1 (P0A429) Photosystem I reaction center subunit XI × 1 (Q8DGB4) Photosystem I reaction center subunit XII × 1 (P0A403) Photosystem I 4.8K protein × 1 (Q8DKP6) CHLOROPHYLL A ISOMER × 1 CHLOROPHYLL A × 95 PHYLLOQUINONE × 2 BETA-CAROTENE × 22 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 4 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 4 IRON/SULFUR CLUSTER × 3 CALCIUM ION × 2 DODECYL-BETA-D-MALTOSIDE × 1 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 1 water × 10 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSAK_THEEB
Isoform —
PDB entities 9
Chains and sequence ranges Author chain K; PDBConstruct 1–83; UniProt 1–83

Photosystem I reaction center subunit XI

OrganismNot specified

UniProt Q8DGB4

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 12 Photosystem I P700 chlorophyll a apoprotein A1 × 1 (P0A405) Photosystem I P700 chlorophyll a apoprotein A2 × 1 (P0A407) Photosystem I iron-sulfur center × 1 (P0A415) Photosystem I reaction center subunit II × 1 (P0A420) Photosystem I reaction center subunit IV × 1 (P0A423) Photosystem I reaction center subunit III × 1 (P0A401) Photosystem I reaction center subunit VIII × 1 (P0A427) Photosystem I reaction center subunit IX × 1 (P0A429) Photosystem I reaction center subunit PsaK × 1 (P0A425) Photosystem I reaction center subunit XII × 1 (P0A403) Photosystem I 4.8K protein × 1 (Q8DKP6) CHLOROPHYLL A ISOMER × 1 CHLOROPHYLL A × 95 PHYLLOQUINONE × 2 BETA-CAROTENE × 22 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 4 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 4 IRON/SULFUR CLUSTER × 3 CALCIUM ION × 2 DODECYL-BETA-D-MALTOSIDE × 1 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 1 water × 10 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 30 Photosystem I P700 chlorophyll a apoprotein A1 × 3 (P0A405) Photosystem I P700 chlorophyll a apoprotein A2 × 3 (P0A407) Photosystem I iron-sulfur center × 3 (P0A415) Photosystem I reaction center subunit II × 3 (P0A420) Photosystem I reaction center subunit III × 3 (P0A401) Photosystem I reaction center subunit VIII × 3 (P0A427) Photosystem I reaction center subunit IX × 3 (P0A429) Photosystem I reaction center subunit XII × 3 (P0A403) Photosystem I 4.8K protein × 3 (Q8DKP6) CHLOROPHYLL A ISOMER × 3 CHLOROPHYLL A × 279 PHYLLOQUINONE × 6 BETA-CAROTENE × 63 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 12 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 12 IRON/SULFUR CLUSTER × 9 CALCIUM ION × 6 DODECYL-BETA-D-MALTOSIDE × 3 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 3 water × 27 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSAL_THEEB
Isoform —
PDB entities 10
Chains and sequence ranges Author chain L; PDBConstruct 1–154; UniProt 2–155

Photosystem I reaction center subunit XII

OrganismNot specified

UniProt P0A403

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 12 Photosystem I P700 chlorophyll a apoprotein A1 × 1 (P0A405) Photosystem I P700 chlorophyll a apoprotein A2 × 1 (P0A407) Photosystem I iron-sulfur center × 1 (P0A415) Photosystem I reaction center subunit II × 1 (P0A420) Photosystem I reaction center subunit IV × 1 (P0A423) Photosystem I reaction center subunit III × 1 (P0A401) Photosystem I reaction center subunit VIII × 1 (P0A427) Photosystem I reaction center subunit IX × 1 (P0A429) Photosystem I reaction center subunit PsaK × 1 (P0A425) Photosystem I reaction center subunit XI × 1 (Q8DGB4) Photosystem I 4.8K protein × 1 (Q8DKP6) CHLOROPHYLL A ISOMER × 1 CHLOROPHYLL A × 95 PHYLLOQUINONE × 2 BETA-CAROTENE × 22 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 4 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 4 IRON/SULFUR CLUSTER × 3 CALCIUM ION × 2 DODECYL-BETA-D-MALTOSIDE × 1 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 1 water × 10 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 30 Photosystem I P700 chlorophyll a apoprotein A1 × 3 (P0A405) Photosystem I P700 chlorophyll a apoprotein A2 × 3 (P0A407) Photosystem I iron-sulfur center × 3 (P0A415) Photosystem I reaction center subunit II × 3 (P0A420) Photosystem I reaction center subunit III × 3 (P0A401) Photosystem I reaction center subunit VIII × 3 (P0A427) Photosystem I reaction center subunit IX × 3 (P0A429) Photosystem I reaction center subunit XI × 3 (Q8DGB4) Photosystem I 4.8K protein × 3 (Q8DKP6) CHLOROPHYLL A ISOMER × 3 CHLOROPHYLL A × 279 PHYLLOQUINONE × 6 BETA-CAROTENE × 63 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 12 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 12 IRON/SULFUR CLUSTER × 9 CALCIUM ION × 6 DODECYL-BETA-D-MALTOSIDE × 3 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 3 water × 27 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name PSAM_THEEB
Isoform —
PDB entities 11
Chains and sequence ranges Author chain M; PDBConstruct 1–31; UniProt 1–31

Photosystem I 4.8K protein

OrganismNot specified

UniProt Q8DKP6

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 12 Photosystem I P700 chlorophyll a apoprotein A1 × 1 (P0A405) Photosystem I P700 chlorophyll a apoprotein A2 × 1 (P0A407) Photosystem I iron-sulfur center × 1 (P0A415) Photosystem I reaction center subunit II × 1 (P0A420) Photosystem I reaction center subunit IV × 1 (P0A423) Photosystem I reaction center subunit III × 1 (P0A401) Photosystem I reaction center subunit VIII × 1 (P0A427) Photosystem I reaction center subunit IX × 1 (P0A429) Photosystem I reaction center subunit PsaK × 1 (P0A425) Photosystem I reaction center subunit XI × 1 (Q8DGB4) Photosystem I reaction center subunit XII × 1 (P0A403) CHLOROPHYLL A ISOMER × 1 CHLOROPHYLL A × 95 PHYLLOQUINONE × 2 BETA-CAROTENE × 22 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 4 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 4 IRON/SULFUR CLUSTER × 3 CALCIUM ION × 2 DODECYL-BETA-D-MALTOSIDE × 1 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 1 water × 10 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 30 Photosystem I P700 chlorophyll a apoprotein A1 × 3 (P0A405) Photosystem I P700 chlorophyll a apoprotein A2 × 3 (P0A407) Photosystem I iron-sulfur center × 3 (P0A415) Photosystem I reaction center subunit II × 3 (P0A420) Photosystem I reaction center subunit III × 3 (P0A401) Photosystem I reaction center subunit VIII × 3 (P0A427) Photosystem I reaction center subunit IX × 3 (P0A429) Photosystem I reaction center subunit XI × 3 (Q8DGB4) Photosystem I reaction center subunit XII × 3 (P0A403) CHLOROPHYLL A ISOMER × 3 CHLOROPHYLL A × 279 PHYLLOQUINONE × 6 BETA-CAROTENE × 63 1,2-DISTEAROYL-MONOGALACTOSYL-DIGLYCERIDE × 12 1,2-DIPALMITOYL-PHOSPHATIDYL-GLYCEROLE × 12 IRON/SULFUR CLUSTER × 9 CALCIUM ION × 6 DODECYL-BETA-D-MALTOSIDE × 3 DIGALACTOSYL DIACYL GLYCEROL (DGDG) × 3 water × 27 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name Q8DKP6_THEEB
Isoform —
PDB entities 12
Chains and sequence ranges Author chain X; PDBConstruct 1–35; UniProt 5–39

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id7m75
Deposition date deposition_date2021-03-26
Structure title titleRoom Temperature XFEL Crystallography reveals asymmetry in the vicinity of the two phylloquinones in Photosystem I
Keywords keywordsMembrane complex, Electron transport, PHOTOSYNTHESIS; PHOTOSYNTHESIS
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

7m75__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

7m75__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

7m75__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)42.54 Å
Rg (electron density)41.30 Å
Total Rg41.77 Å
Atom count48777
Residues2244
Excluded volume456160 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 7m75__assembly_1__model_1 dodecameric (12) Success 4.1.3-1-20251215 (887e7ef) View Download
2 1 7m75__assembly_2__model_1 30-meric (30) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (23)

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6. Fold Classification (SCOP + CATH) 1 domains

CATH v4.4 (1 domains)

Domain ID domain_id7m75L01
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology1240 — Photosystem 1 Reaction Centre Subunit Xi; Chain: L;
Homologous superfamily homologous superfamily10 — Photosystem I PsaL, reaction centre subunit XI
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7. Citations (1)