SAXSdb — 7oae

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1. Protein Identity and Related Structures Protein Identity & Related Structures

Fungal defensin plectasin

Pseudoplectania nigrella

State in the Current Structure

Assembly	Physical composition	Protein state	Molecular copy count	Associated components	Data consistency
1	Protein homooligomer	Homooligomer	Protein 42	No other associated polymer	Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence

UniProt name	DEFPL_PSENR
Isoform	—
PDB entities	1
Chains and sequence ranges	Author chain 0； PDBConstruct 1–40； UniProt 56–95 Author chain 1； PDBConstruct 1–40； UniProt 56–95 Author chain 2； PDBConstruct 1–40； UniProt 56–95 Author chain 3； PDBConstruct 1–40； UniProt 56–95 Author chain 4； PDBConstruct 1–40； UniProt 56–95 Author chain 5； PDBConstruct 1–40； UniProt 56–95 Author chain 6； PDBConstruct 1–40； UniProt 56–95 Author chain 7； PDBConstruct 1–40； UniProt 56–95 Author chain 8； PDBConstruct 1–40； UniProt 56–95 Author chain 9； PDBConstruct 1–40； UniProt 56–95 Author chain A； PDBConstruct 1–40； UniProt 56–95 Author chain B； PDBConstruct 1–40； UniProt 56–95 Author chain C； PDBConstruct 1–40； UniProt 56–95 Author chain D； PDBConstruct 1–40； UniProt 56–95 Author chain E； PDBConstruct 1–40； UniProt 56–95 Author chain F； PDBConstruct 1–40； UniProt 56–95 Author chain G； PDBConstruct 1–40； UniProt 56–95 Author chain H； PDBConstruct 1–40； UniProt 56–95 Author chain I； PDBConstruct 1–40； UniProt 56–95 Author chain J； PDBConstruct 1–40； UniProt 56–95 Author chain K； PDBConstruct 1–40； UniProt 56–95 Author chain L； PDBConstruct 1–40； UniProt 56–95 Author chain M； PDBConstruct 1–40； UniProt 56–95 Author chain N； PDBConstruct 1–40； UniProt 56–95 Author chain O； PDBConstruct 1–40； UniProt 56–95 Author chain P； PDBConstruct 1–40； UniProt 56–95 Author chain Q； PDBConstruct 1–40； UniProt 56–95 Author chain R； PDBConstruct 1–40； UniProt 56–95 Author chain S； PDBConstruct 1–40； UniProt 56–95 Author chain T； PDBConstruct 1–40； UniProt 56–95 Author chain U； PDBConstruct 1–40； UniProt 56–95 Author chain V； PDBConstruct 1–40； UniProt 56–95 Author chain W； PDBConstruct 1–40； UniProt 56–95 Author chain X； PDBConstruct 1–40； UniProt 56–95 Author chain Y； PDBConstruct 1–40； UniProt 56–95 Author chain Z； PDBConstruct 1–40； UniProt 56–95 Author chain a； PDBConstruct 1–40； UniProt 56–95 Author chain b； PDBConstruct 1–40； UniProt 56–95 Author chain c； PDBConstruct 1–40； UniProt 56–95 Author chain d； PDBConstruct 1–40； UniProt 56–95 Author chain e； PDBConstruct 1–40； UniProt 56–95 Author chain f； PDBConstruct 1–40； UniProt 56–95

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id	7oae
Deposition date deposition_date	2021-04-19
Structure title title	Cryo-EM structure of the plectasin fibril (double strands)
Keywords keywords	fibril, helical, ANTIMICROBIAL PROTEIN; ANTIMICROBIAL PROTEIN
Experimental Method method	ELECTRON MICROSCOPY

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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

7oae__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

7oae__assembly_1__model_1 | I(q)

100 plotted points; both axes use logarithmic scales.

7oae__assembly_1__model_1 | P(r) · Pending

P(r) will be calculated and displayed separately for the same assembly/model.

Rg（Guinier）	39.88 Å
Rg (electron density)	39.56 Å
Total Rg	40.00 Å
Atom count	12768
Residues	1680
Excluded volume	224190 Å³
Maximum q	0.500 Å⁻¹

Assembly	Model	Structure unit	Oligomeric description	Status	CRYSOL	Actions
1	1	`7oae__assembly_1__model_1`	42-meric （42）	Success	4.1.3-1-20251215 (887e7ef)	View Download

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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (1)

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Unit-cell length a length_a	1.000 Å
Unit-cell length b length_b	1.000 Å
Unit-cell length c length_c	1.000 Å
Unit-cell angle α angle_alpha	90.00 °
Unit-cell angle β angle_beta	90.00 °
Unit-cell angle γ angle_gamma	90.00 °
Molecules per unit cell Z z_pdb	—

Space group space_group	P 1
Space-group number int_tables_number	1
Crystal system crystal_system	—

Resolution resolution	2.00 Å
Resolution测定Method resolution_method	—
颗粒数 num_particles	764822

Description description	Fungal defensin plectasin
Molecular weight formula_weight	4402.1 kDa
Source method src_method	man
Copy count entity_count	42

Polymer type type	polypeptide(L)
Chain IDs strand_id	B,C,D,E,F,G,H,I,J,K,L,M,N,T,U,A,O,P,Q,R,S,V,W,X,Y,Z,0,1,2,3,4,5,6,7,8,9,a,b,c,d,e,f
Atom count atom_count	12768

Cryo-EM structure of the plectasin fibril (double strands)

1. Protein Identity and Related Structures Protein Identity & Related Structures

Fungal defensin plectasin

State in the Current Structure

Other States of the Same Protein in the Database

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

7oae__assembly_1__model_1

7oae__assembly_1__model_1 | I(q)

7oae__assembly_1__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

冷冻电镜 EM 3D

5. Entities and Polymers Entities & Polymers (1)

Entity 1 Entity 1 polymer

Polymer Polymer

Source Source

7. Citations (1)

Source organism organism	Pseudoplectania nigrella
Common name common_name	Ebony cup
NCBI taxonomy ID ncbi_taxonomy_id	96584
Host organism host_organism	Escherichia coli

Cryo-EM structure of the plectasin fibril (double strands)

1. Protein Identity and Related Structures Protein Identity & Related Structures

Fungal defensin plectasin

State in the Current Structure

Other States of the Same Protein in the Database

Monomer

Homodimer

Homotetramer

Other homooligomers

Heteromeric or nucleic-acid complex

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

7oae__assembly_1__model_1

7oae__assembly_1__model_1 | I(q)

7oae__assembly_1__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

冷冻电镜 EM 3D

5. Entities and Polymers Entities & Polymers (1)

Entity 1 Entity 1 polymer

Polymer Polymer

Source Source

7. Citations (1)