7t6n

Cryo-EM structure of TRPV5 in nanodiscs at pH6 state 2

Method: ELECTRON MICROSCOPY D_max: 143.8 Å Quality: GOOD

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1. Protein Identity and Related Structures Protein Identity & Related Structures

Transient receptor potential cation channel subfamily V member 5

Oryctolagus cuniculus

State in the Current Structure

Assembly	Oligomeric State	Construct	Mutations and Modifications	Ligands, Ions and Associated Components	Method and Experimental Conditions	Structure Quality
1	Protein homooligomer Homooligomer Protein × 4 PDB declaration: tetrameric（4） Consistent with protein copy count	Chain A； UniProt 1–730 Chain B； UniProt 1–730 Chain C； UniProt 1–730 Chain D； UniProt 1–730	Not recorded	No other associated polymer	ELECTRON MICROSCOPY cryo-EM buffer：pH 6 cryo-EM vitrification conditions：Cryogen ETHANE	Resolution 2.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

Other PDB	Difference from Current Entry 7T6N	Assembly / Oligomeric State	Construct	Mutations and Modifications	Ligands, Ions and Non-polymers	Method and Experimental Conditions	Structure Quality
6B5V Structure of TRPV5 in complex with econazole Deposited 2017-09-29	Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 1 Protein homooligomer Homooligomer；Protein × 4 PDB declaration: tetrameric	Chain A 1–730（730 aa） Chain B 1–730（730 aa） Chain C 1–730（730 aa） Chain D 1–730（730 aa）	Not recorded	ECL 1-[(2R)-2-[(4-chlorobenzyl)oxy]-2-(2,4-dichlorophenyl)ethyl]-1H-imidazole × 4 CA CALCIUM ION × 1	ELECTRON MICROSCOPY cryo-EM buffer pH 8 cryo-EM vitrification conditions Cryogen ETHANE	Resolution 4.80 Å
6DMR Lipid-bound full-length rbTRPV5 Deposited 2018-06-05	Different experimental conditions Different structure-quality metrics	Assembly 1 Protein homooligomer Homooligomer；Protein × 4 PDB declaration: tetrameric	Chain A 1–730（730 aa） Chain B 1–730（730 aa） Chain C 1–730（730 aa） Chain D 1–730（730 aa）	Not recorded	No recorded non-water small molecule	ELECTRON MICROSCOPY cryo-EM buffer pH 8 cryo-EM vitrification conditions Cryogen ETHANE	Resolution 3.90 Å
6DMU PI(4,5)P2 bound full-length rbTRPV5 Deposited 2018-06-05	Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 1 Protein homooligomer Homooligomer；Protein × 4 PDB declaration: tetrameric	Chain A 1–730（730 aa） Chain B 1–730（730 aa） Chain C 1–730（730 aa） Chain D 1–730（730 aa）	Not recorded	PIO [(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate × 4	ELECTRON MICROSCOPY cryo-EM buffer pH 8 cryo-EM vitrification conditions Cryogen ETHANE	Resolution 4.00 Å
6DMW Calmodulin-bound full-length rbTRPV5 Deposited 2018-06-05	Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 1 Protein heterocomplex Heteromer；Protein × 5 PDB declaration: pentameric	Chain A 1–730（730 aa） Chain B 1–730（730 aa） Chain C 1–730（730 aa） Chain D 1–730（730 aa）	Not recorded	CA CALCIUM ION × 3	ELECTRON MICROSCOPY cryo-EM buffer pH 8.8 cryo-EM vitrification conditions Cryogen ETHANE	Resolution 4.40 Å
6O1N Cryo-EM structure of TRPV5 (1-660) in nanodisc Deposited 2019-02-21	Different experimental conditions	Assembly 1 Protein homooligomer Homooligomer；Protein × 4 PDB declaration: tetrameric	Chain A 1–730（730 aa） Chain B 1–730（730 aa） Chain C 1–730（730 aa） Chain D 1–730（730 aa）	Not recorded	No recorded non-water small molecule	ELECTRON MICROSCOPY cryo-EM buffer pH 8 cryo-EM vitrification conditions Cryogen ETHANE	Resolution 2.90 Å
6O1P Cryo-EM structure of full length TRPV5 in nanodisc Deposited 2019-02-21	Different experimental conditions Different structure-quality metrics	Assembly 1 Protein homooligomer Homooligomer；Protein × 4 PDB declaration: tetrameric	Chain A 1–730（730 aa） Chain B 1–730（730 aa） Chain C 1–730（730 aa） Chain D 1–730（730 aa）	Not recorded	No recorded non-water small molecule	ELECTRON MICROSCOPY cryo-EM buffer pH 8 cryo-EM vitrification conditions Cryogen ETHANE	Resolution 3.00 Å
6O1U Cryo-EM structure of TRPV5 W583A in nanodisc Deposited 2019-02-21	Different experimental conditions Different structure-quality metrics	Assembly 1 Protein homooligomer Homooligomer；Protein × 4 PDB declaration: tetrameric	Chain A 1–730（730 aa） Chain B 1–730（730 aa） Chain C 1–730（730 aa） Chain D 1–730（730 aa）	Not recorded	No recorded non-water small molecule	ELECTRON MICROSCOPY cryo-EM buffer pH 8 cryo-EM vitrification conditions Cryogen ETHANE	Resolution 2.80 Å
6O20 Cryo-EM structure of TRPV5 with calmodulin bound Deposited 2019-02-22	Different construct Different mutation/modification Different oligomeric state Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 1 Protein heterocomplex Heteromer；Protein × 6 PDB declaration: hexameric	Chain A 1–730（730 aa） Chain B 1–730（730 aa） Chain C 1–730（730 aa） Chain D 1–730（730 aa） Chain E 1–730（730 aa）	Not recorded	CA CALCIUM ION × 4	ELECTRON MICROSCOPY cryo-EM buffer pH 8 cryo-EM vitrification conditions Cryogen ETHANE	Resolution 3.30 Å
6PBE ZINC17988990-bound TRPV5 in nanodiscs Deposited 2019-06-13	Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 1 Protein homooligomer Homooligomer；Protein × 4 PDB declaration: tetrameric	Chain A 1–730（730 aa） Chain B 1–730（730 aa） Chain C 1–730（730 aa） Chain D 1–730（730 aa）	Not recorded	O6S (4-oxo-5-phenyl-3,4-dihydrothieno[2,3-d]pyrimidin-2-yl)methyl 3-(3-oxo-2,3-dihydro-4H-1,4-benzoxazin-4-yl)propanoate × 8	ELECTRON MICROSCOPY cryo-EM buffer pH 8 cryo-EM vitrification conditions Cryogen ETHANE	Resolution 3.78 Å
6PBF ZINC9155420-bound TRPV5 in nanodiscs Deposited 2019-06-13	Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 1 Protein homooligomer Homooligomer；Protein × 4 PDB declaration: tetrameric	Chain A 1–730（730 aa） Chain B 1–730（730 aa） Chain C 1–730（730 aa） Chain D 1–730（730 aa）	Not recorded	O6V (1S)-1-(4-oxo-5-phenyl-3,4-dihydrothieno[2,3-d]pyrimidin-2-yl)ethyl [(2S)-3-oxo-3,4-dihydro-2H-1,4-benzothiazin-2-yl]acetate × 4	ELECTRON MICROSCOPY cryo-EM buffer pH 8 cryo-EM vitrification conditions Cryogen ETHANE	Resolution 4.20 Å
7T6J Cryo-EM structure of TRPV5 at pH8 in nanodiscs Deposited 2021-12-14	Different experimental conditions Different structure-quality metrics	Assembly 1 Protein homooligomer Homooligomer；Protein × 4 PDB declaration: tetrameric	Chain A 1–730（730 aa） Chain B 1–730（730 aa） Chain C 1–730（730 aa） Chain D 1–730（730 aa）	Not recorded	No recorded non-water small molecule	ELECTRON MICROSCOPY cryo-EM buffer pH 8 cryo-EM vitrification conditions Cryogen ETHANE	Resolution 3.20 Å
7T6K Cryo-EM structure of TRPV5 at pH6 in nanodiscs Deposited 2021-12-14	Different structure-quality metrics	Assembly 1 Protein homooligomer Homooligomer；Protein × 4 PDB declaration: tetrameric	Chain A 1–730（730 aa） Chain B 1–730（730 aa） Chain C 1–730（730 aa） Chain D 1–730（730 aa）	Not recorded	No recorded non-water small molecule	ELECTRON MICROSCOPY cryo-EM buffer pH 6 cryo-EM vitrification conditions Cryogen ETHANE	Resolution 3.00 Å
7T6L Cryo-EM structure of TRPV5 at pH5 in nanodiscs Deposited 2021-12-14	Different experimental conditions Different structure-quality metrics	Assembly 1 Protein homooligomer Homooligomer；Protein × 4 PDB declaration: tetrameric	Chain A 1–730（730 aa） Chain B 1–730（730 aa） Chain C 1–730（730 aa） Chain D 1–730（730 aa）	Not recorded	No recorded non-water small molecule	ELECTRON MICROSCOPY cryo-EM buffer pH 5 cryo-EM vitrification conditions Cryogen ETHANE	Resolution 3.70 Å
7T6M Cryo-EM structure of TRPV5 in nanodiscs with PI(4,5)P2 at pH6 state 1 Deposited 2021-12-14	Different ligand/ion Different structure-quality metrics	Assembly 1 Protein homooligomer Homooligomer；Protein × 4 PDB declaration: tetrameric	Chain A 1–730（730 aa） Chain B 1–730（730 aa） Chain C 1–730（730 aa） Chain D 1–730（730 aa）	Not recorded	PIO [(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate × 4	ELECTRON MICROSCOPY cryo-EM buffer pH 6 cryo-EM vitrification conditions Cryogen ETHANE	Resolution 2.80 Å
7T6O Cryo-EM structure of TRPV5 in nanodiscs at pH6 state 3 Deposited 2021-12-14	Different structure-quality metrics	Assembly 1 Protein homooligomer Homooligomer；Protein × 4 PDB declaration: tetrameric	Chain A 1–730（730 aa） Chain B 1–730（730 aa） Chain C 1–730（730 aa） Chain D 1–730（730 aa）	Not recorded	No recorded non-water small molecule	ELECTRON MICROSCOPY cryo-EM buffer pH 6 cryo-EM vitrification conditions Cryogen ETHANE	Resolution 2.60 Å
7T6P Cryo-EM structure of TRPV5 T709D in nanodiscs Deposited 2021-12-14	Different mutation/modification Different experimental conditions Different structure-quality metrics	Assembly 1 Protein homooligomer Homooligomer；Protein × 4 PDB declaration: tetrameric	Chain A 1–730（730 aa） Chain B 1–730（730 aa） Chain C 1–730（730 aa） Chain D 1–730（730 aa）	Mutation：T709D Mutation：T709D Mutation：T709D Mutation：T709D	No recorded non-water small molecule	ELECTRON MICROSCOPY cryo-EM buffer pH 8 cryo-EM vitrification conditions Cryogen ETHANE	Resolution 2.80 Å
7T6Q Cryo-EM structure of TRPV5 T709D with PI(4,5)P2 in nanodiscs Deposited 2021-12-14	Different mutation/modification Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 1 Protein homooligomer Homooligomer；Protein × 4 PDB declaration: tetrameric	Chain A 1–730（730 aa） Chain B 1–730（730 aa） Chain C 1–730（730 aa） Chain D 1–730（730 aa）	Mutation：T709D Mutation：T709D Mutation：T709D Mutation：T709D	PIO [(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate × 4	ELECTRON MICROSCOPY cryo-EM buffer pH 8 cryo-EM vitrification conditions Cryogen ETHANE	Resolution 3.40 Å
7T6R Cryo-EM structure of TRPV5 T709D in nanodiscs in the presence of Calmodulin Deposited 2021-12-14	Different mutation/modification Different experimental conditions Different structure-quality metrics	Assembly 1 Protein homooligomer Homooligomer；Protein × 4 PDB declaration: tetrameric	Chain A 1–730（730 aa） Chain B 1–730（730 aa） Chain C 1–730（730 aa） Chain D 1–730（730 aa）	Mutation：T709D Mutation：T709D Mutation：T709D Mutation：T709D	No recorded non-water small molecule	ELECTRON MICROSCOPY cryo-EM buffer pH 8 cryo-EM vitrification conditions Cryogen ETHANE	Resolution 3.00 Å
8FFN RR-bound wildtype rabbit TRPV5 in nanodiscs Deposited 2022-12-09	Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 1 Protein homooligomer Homooligomer；Protein × 4 PDB declaration: tetrameric	Chain A 1–730（730 aa） Chain B 1–730（730 aa） Chain C 1–730（730 aa） Chain D 1–730（730 aa）	Not recorded	R2R ruthenium(6+) azanide pentaamino(oxido)ruthenium (1/4/2) × 1 POV (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate × 8 ERG ERGOSTEROL × 8	ELECTRON MICROSCOPY cryo-EM buffer pH 8 cryo-EM vitrification conditions Cryogen ETHANE	Resolution 2.96 Å
8FFO Cryo-EM structure of wildtype rabbit TRPV5 with PI(4,5)P2 in nanodiscs Deposited 2022-12-09	Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 1 Protein homooligomer Homooligomer；Protein × 4 PDB declaration: tetrameric	Chain A 1–730（730 aa） Chain B 1–730（730 aa） Chain C 1–730（730 aa） Chain D 1–730（730 aa）	Not recorded	ERG ERGOSTEROL × 8 CPL 1-PALMITOYL-2-LINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE × 16 PIO [(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate × 4	ELECTRON MICROSCOPY cryo-EM buffer pH 8 cryo-EM vitrification conditions Cryogen ETHANE	Resolution 3.50 Å
8FFQ Wildtype rabbit TRPV5 into nanodiscs in the presence of PI(4,5)P2 and ruthenium red Deposited 2022-12-09	Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 1 Protein homooligomer Homooligomer；Protein × 4 PDB declaration: tetrameric	Chain A 1–730（730 aa） Chain B 1–730（730 aa） Chain C 1–730（730 aa） Chain D 1–730（730 aa）	Not recorded	ERG ERGOSTEROL × 8 R2R ruthenium(6+) azanide pentaamino(oxido)ruthenium (1/4/2) × 1 CPL 1-PALMITOYL-2-LINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE × 4	ELECTRON MICROSCOPY cryo-EM buffer pH 8 cryo-EM vitrification conditions Cryogen ETHANE	Resolution 2.65 Å
8FHH Wildtype rabbit TRPV5 in nanodiscs in the presence of oleoyl coenzyme A, Closed stated Deposited 2022-12-14	Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 1 Protein homooligomer Homooligomer；Protein × 4 PDB declaration: tetrameric	Chain A 1–730（730 aa） Chain B 1–730（730 aa） Chain C 1–730（730 aa） Chain D 1–730（730 aa）	Not recorded	POV (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate × 4 ERG ERGOSTEROL × 8	ELECTRON MICROSCOPY cryo-EM buffer pH 8 cryo-EM vitrification conditions Cryogen ETHANE	Resolution 3.09 Å
8FHI Wildtype rabbit TRPV5 in nanodiscs in complex with oleoyl coenzyme A, Open stated Deposited 2022-12-14	Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 1 Protein homooligomer Homooligomer；Protein × 4 PDB declaration: tetrameric	Chain A 1–730（730 aa） Chain B 1–730（730 aa） Chain C 1–730（730 aa） Chain D 1–730（730 aa）	Not recorded	ERG ERGOSTEROL × 8 3VV S-{(3R,5R,9R)-1-[(2R,3S,4R,5R)-5-(6-amino-9H-purin-9-yl)-4-hydroxy-3-(phosphonooxy)tetrahydrofuran-2-yl]-3,5,9-trihydroxy-8,8-dimethyl-3,5-dioxido-10,14-dioxo-2,4,6-trioxa-11,15-diaza-3lambda~5~,5lambda~5~-diphosphaheptadecan-17-yl} (9Z)-octadec-9-enethioate (non-preferred name) × 4 POV (2S)-3-(hexadecanoyloxy)-2-[(9Z)-octadec-9-enoyloxy]propyl 2-(trimethylammonio)ethyl phosphate × 4	ELECTRON MICROSCOPY cryo-EM buffer pH 8 cryo-EM vitrification conditions Cryogen ETHANE	Resolution 3.25 Å
8TF2 Wildtype rabbit TRPV5 into nanodiscs in Apo state Deposited 2023-07-07	Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 1 Protein homooligomer Homooligomer；Protein × 4 PDB declaration: tetrameric	Chain A 1–730（730 aa） Chain B 1–730（730 aa） Chain C 1–730（730 aa） Chain D 1–730（730 aa）	Not recorded	ERG ERGOSTEROL × 8 CPL 1-PALMITOYL-2-LINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE × 16	ELECTRON MICROSCOPY cryo-EM buffer pH 8 cryo-EM vitrification conditions Cryogen ETHANE	Resolution 2.57 Å
8TF3 Wildtype rabbit TRPV5 into nanodiscs in complex with econazole Deposited 2023-07-07	Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 1 Protein homooligomer Homooligomer；Protein × 4 PDB declaration: tetrameric	Chain A 1–730（730 aa） Chain B 1–730（730 aa） Chain C 1–730（730 aa） Chain D 1–730（730 aa）	Not recorded	ERG ERGOSTEROL × 8 CPL 1-PALMITOYL-2-LINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE × 8 ECN 1-[(2S)-2-[(4-CHLOROBENZYL)OXY]-2-(2,4-DICHLOROPHENYL)ETHYL]-1H-IMIDAZOLE × 4	ELECTRON MICROSCOPY cryo-EM buffer pH 8 cryo-EM vitrification conditions Cryogen ETHANE	Resolution 2.94 Å
8TF4 Wildtype rabbit TRPV5 into nanodiscs in the presence of PI(4,5)P2 and econazole Deposited 2023-07-07	Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 1 Protein homooligomer Homooligomer；Protein × 4 PDB declaration: tetrameric	Chain A 1–730（730 aa） Chain B 1–730（730 aa） Chain C 1–730（730 aa） Chain D 1–730（730 aa）	Not recorded	ERG ERGOSTEROL × 8 CPL 1-PALMITOYL-2-LINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE × 8 ECN 1-[(2S)-2-[(4-CHLOROBENZYL)OXY]-2-(2,4-DICHLOROPHENYL)ETHYL]-1H-IMIDAZOLE × 4	ELECTRON MICROSCOPY cryo-EM buffer pH 8 cryo-EM vitrification conditions Cryogen ETHANE	Resolution 2.86 Å
9O6G Wildtype rabbit TRPV5 in nanodics in the presence of Menthol and PI(4,5)P2 Deposited 2025-04-13	Different ligand/ion Different experimental conditions Different structure-quality metrics	Assembly 1 Protein homooligomer Homooligomer；Protein × 4 PDB declaration: tetrameric	Chain A 1–730（730 aa） Chain B 1–730（730 aa） Chain C 1–730（730 aa） Chain D 1–730（730 aa）	Not recorded	ERG ERGOSTEROL × 8 CPL 1-PALMITOYL-2-LINOLEOYL-SN-GLYCERO-3-PHOSPHOCHOLINE × 16 PIO [(2R)-2-octanoyloxy-3-[oxidanyl-[(1R,2R,3S,4R,5R,6S)-2,3,6-tris(oxidanyl)-4,5-diphosphonooxy-cyclohexyl]oxy-phosphoryl]oxy-propyl] octanoate × 4 IT9 (-)-Isopiperitenone × 1	ELECTRON MICROSCOPY cryo-EM buffer pH 8 cryo-EM vitrification conditions Cryogen ETHANE	Resolution 3.37 Å

27 other PDB entries and 27 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence

UniProt name	TRPV5_RABIT
Isoform	—
PDB entities	1
Chains and sequence ranges	Author chain A； PDBConstruct 1–730； UniProt 1–730 Author chain B； PDBConstruct 1–730； UniProt 1–730 Author chain C； PDBConstruct 1–730； UniProt 1–730 Author chain D； PDBConstruct 1–730； UniProt 1–730

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

P(r) Distance Distribution P(r) Distribution

Download Download SAXS (.dat) P(r) (.pr.out) CIF

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2. Structure Basics 2. Structure Basics

Entry ID entry_id	7t6n
Deposition date deposition_date	2021-12-14
Structure title title	Cryo-EM structure of TRPV5 in nanodiscs at pH6 state 2
Keywords keywords	Calcium, Ion channel, Kidney, TRANSPORT PROTEIN; TRANSPORT PROTEIN
Experimental Method method	ELECTRON MICROSCOPY

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3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier	47.10 Å
Radius of gyration Rg (electron density) rg_electron	46.04 Å
Forward intensity I(0) i0	1018300000.00
Molecular weight molecular_weight	275950.0 kDa
Excluded volume excluded_volume	349710 Å³
Envelope volume envelope_volume	482460 Å³
Hydration-shell volume shell_volume	84281 Å³
Envelope diameter envelope_diameter	143.5 Å
Shell Rg shell_rg	53.83 Å
Envelope Rg envelope_rg	44.79 Å
Shape Rg shape_rg	46.03 Å
Total Rg total_rg	46.36 Å
Total atoms total_atoms	19412
Residues n_residues	2424
Spherical-harmonic order n_harmonics	20
q range q_range	— – 0.5000 Å⁻¹
Data points n_points	101
Shell type shell_type	directional
Solvent electron density solvent_density	0.3340 e/Å³
Shell contrast contrast_shell	0.0300 e/Å³
CRYSOL version crysol_version	4.1.3

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4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax	143.8 Å
Rg (real space) rg_real	46.70 Å
Rg uncertainty (real space) rg_real_error	1.15 Å
I(0) (real space) i0_real	1.0180e+09
I(0) uncertainty (real space) i0_real_error	1.7260e+07
Rg (reciprocal space) rg_reciprocal	47.10 Å
I(0) (reciprocal space) i0_reciprocal	1019000000.0000
Solution quality estimate total_estimate	0.8903
Solution quality rating solution_quality	GOOD a GOOD solution
P(r) peaks n_peaks	1
Primary peak position r_peak_primary	65.4 Å
Skewness Skewness skewness	-0.039
Kurtosis Kurtosis kurtosis	-0.577
Angular range angular_range	— – 0.1650 Å⁻¹
Current regularization parameter α current_alpha	0.0000
Highest regularization parameter α highest_alpha	45590000.0000
Real-space data points n_real_points	34
GNOM version gnom_version	4.1.3
Quality Criteria quality_criteria	AN1: 0.000; Oscil: 0.910; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.958; Smooth: 0.882

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5. Crystallography and Experiment 5. Crystallography & Experiment

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6. Entities and Polymers Entities & Polymers (1)

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8. Citations (1)

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Unit-cell length a length_a	1.000 Å
Unit-cell length b length_b	1.000 Å
Unit-cell length c length_c	1.000 Å
Unit-cell angle α angle_alpha	90.00 °
Unit-cell angle β angle_beta	90.00 °
Unit-cell angle γ angle_gamma	90.00 °
Molecules per unit cell Z z_pdb	—

Space group space_group	P 1
Space-group number int_tables_number	1
Crystal system crystal_system	—

Resolution resolution	2.90 Å
Resolution测定方法 resolution_method	—
颗粒数 num_particles	67926

Description description	Transient receptor potential cation channel subfamily V member 5
Molecular weight formula_weight	83784.6 kDa
Source method src_method	man
Copy count entity_count	4

Polymer type type	polypeptide(L)
Chain IDs strand_id	A,B,C,D
Atom count atom_count	19412

Cryo-EM structure of TRPV5 in nanodiscs at pH6 state 2

1. Protein Identity and Related Structures Protein Identity & Related Structures

Transient receptor potential cation channel subfamily V member 5

State in the Current Structure

Other States of the Same Protein in the Database

SAXS scattering curve SAXS Profile

P(r) Distance Distribution P(r) Distribution

2. Structure Basics 2. Structure Basics

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

5. Crystallography and Experiment 5. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

冷冻电镜 EM 3D

6. Entities and Polymers Entities & Polymers (1)

Entity 1 Entity 1 polymer

Polymer Polymer

来源 Source

8. Citations (1)

9. Files and Curves (10)

Files (7)

Curves (3)

来源生物 organism	Oryctolagus cuniculus
通用名 common_name	rabbit
NCBI Class编号 ncbi_taxonomy_id	9986
宿主生物 host_organism	Saccharomyces cerevisiae

fit	/app/data/saxs_computation/t6/7t6n/7t6n.fit
pddf	/app/data/pr_computation/t6/7t6n/7t6n.pr.out
profile	/app/data/saxs_computation/t6/7t6n/7t6n.dat