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7xqd

Structure of C-terminal truncated connexin43/Cx43/GJA1 gap junction intercellular channel in POPE/CHS nanodiscs (C1 symmetry)

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Gap junction alpha-1 protein

Homo sapiens

UniProt P17302

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein homooligomer Homooligomer Protein 12 TETRADECANE × 108 PHOSPHATIDYLETHANOLAMINE × 24 CHOLESTEROL HEMISUCCINATE × 24 water × 12 Consistent with protein count

Other States of the Same Protein in the Database

Monomer
2ll2

1 assemblies

Homodimer

None

Homotetramer

None

Other homooligomers
7f92 7f93 7f94 7xq9 7xqb 7xqd 7xqf 7xqg 7xqh 7xqi 7xqj 7z1t

18 assemblies; showing the first 12

Heteromeric or nucleic-acid complex

None

View Construct and Data Evidence
UniProt name CXA1_HUMAN
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A； PDBConstruct 1–257； UniProt 1–257 Author chain B； PDBConstruct 1–257； UniProt 1–257 Author chain C； PDBConstruct 1–257； UniProt 1–257 Author chain D； PDBConstruct 1–257； UniProt 1–257 Author chain E； PDBConstruct 1–257； UniProt 1–257 Author chain F； PDBConstruct 1–257； UniProt 1–257 Author chain G； PDBConstruct 1–257； UniProt 1–257 Author chain H； PDBConstruct 1–257； UniProt 1–257 Author chain I； PDBConstruct 1–257； UniProt 1–257 Author chain J； PDBConstruct 1–257； UniProt 1–257 Author chain K； PDBConstruct 1–257； UniProt 1–257 Author chain L； PDBConstruct 1–257； UniProt 1–257

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id7xqd
Deposition date deposition_date2022-05-07
Structure title titleStructure of C-terminal truncated connexin43/Cx43/GJA1 gap junction intercellular channel in POPE/CHS nanodiscs (C1 symmetry)
Keywords keywordsCx43, Connexin, Gap junction channel, Gating mechanism, Membrane protein; MEMBRANE PROTEIN
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

7xqd__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

7xqd__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

7xqd__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）51.43 Å
Rg (electron density)52.52 Å
Total Rg52.58 Å
Atom count47748
Residues2412
Excluded volume434710 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 7xqd__assembly_1__model_1 dodecameric （12） Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (5)

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6. Fold Classification (SCOP + CATH) 12 domains

CATH v4.4 (12 domains)

Domain ID domain_id7xqdA01
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology1440 — de novo design (two linked rop proteins)
Homologous superfamily homologous superfamily80 — Gap junction channel protein cysteine-rich domain
Domain ID domain_id7xqdB01
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology1440 — de novo design (two linked rop proteins)
Homologous superfamily homologous superfamily80 — Gap junction channel protein cysteine-rich domain
Domain ID domain_id7xqdC01
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology1440 — de novo design (two linked rop proteins)
Homologous superfamily homologous superfamily80 — Gap junction channel protein cysteine-rich domain
Domain ID domain_id7xqdD01
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology1440 — de novo design (two linked rop proteins)
Homologous superfamily homologous superfamily80 — Gap junction channel protein cysteine-rich domain
Domain ID domain_id7xqdE01
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology1440 — de novo design (two linked rop proteins)
Homologous superfamily homologous superfamily80 — Gap junction channel protein cysteine-rich domain
Domain ID domain_id7xqdF01
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology1440 — de novo design (two linked rop proteins)
Homologous superfamily homologous superfamily80 — Gap junction channel protein cysteine-rich domain
Domain ID domain_id7xqdG01
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology1440 — de novo design (two linked rop proteins)
Homologous superfamily homologous superfamily80 — Gap junction channel protein cysteine-rich domain
Domain ID domain_id7xqdH01
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology1440 — de novo design (two linked rop proteins)
Homologous superfamily homologous superfamily80 — Gap junction channel protein cysteine-rich domain
Domain ID domain_id7xqdI01
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology1440 — de novo design (two linked rop proteins)
Homologous superfamily homologous superfamily80 — Gap junction channel protein cysteine-rich domain
Domain ID domain_id7xqdJ01
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology1440 — de novo design (two linked rop proteins)
Homologous superfamily homologous superfamily80 — Gap junction channel protein cysteine-rich domain
Domain ID domain_id7xqdK01
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology1440 — de novo design (two linked rop proteins)
Homologous superfamily homologous superfamily80 — Gap junction channel protein cysteine-rich domain
Domain ID domain_id7xqdL01
Class class1 — Mainly Alpha
Architecture architecture20 — Up-down Bundle
Topology topology1440 — de novo design (two linked rop proteins)
Homologous superfamily homologous superfamily80 — Gap junction channel protein cysteine-rich domain
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7. Citations (1)