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8apm

Vaccinia virus DNA helicase D5 residues 323-785 hexamer with bound DNA processed in C1

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Primase D5

Vaccinia virus Copenhagen

UniProt P21010

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–DNA Homooligomer Protein 6 DNA 2 ;DNA (5'-D(P*CP*CP*GP*AP*AP*TP*CP*A)-3') ; × 1 ;DNA (5'-D(P*TP*GP*AP*TP*TP*CP*GP*G)-3') ; × 1 Consistent with all polymers

Other States of the Same Protein in the Database

Monomer

None

Homodimer

None

Homotetramer

None

Other homooligomers
8apl

1 assemblies

Heteromeric or nucleic-acid complex
8apm

1 assemblies

View Construct and Data Evidence
UniProt name D5_VACCC
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A； PDBConstruct 3–465； UniProt 323–785 Author chain B； PDBConstruct 3–465； UniProt 323–785 Author chain C； PDBConstruct 3–465； UniProt 323–785 Author chain D； PDBConstruct 3–465； UniProt 323–785 Author chain E； PDBConstruct 3–465； UniProt 323–785 Author chain F； PDBConstruct 3–465； UniProt 323–785

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id8apm
Deposition date deposition_date2022-08-10
Structure title titleVaccinia virus DNA helicase D5 residues 323-785 hexamer with bound DNA processed in C1
Keywords keywordsDNA helicase, D5_N domain, DUF5906 domain, Pox_D5 domain, SF3 helicase, VIRAL PROTEIN; VIRAL PROTEIN
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

8apm__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

8apm__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

8apm__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）43.01 Å
Rg (electron density)42.28 Å
Total Rg42.74 Å
Atom count20723
Residues2530
Excluded volume371580 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 8apm__assembly_1__model_1 octameric （8） Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (3)

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7. Citations (1)