Capsid protein
OrganismNot specified
State in the Current Structure
| Assembly | Oligomeric State | Construct | Mutations and Modifications | Ligands, Ions and Associated Components | Method and Experimental Conditions | Structure Quality |
|---|---|---|---|---|---|---|
| 1 | Protein homooligomer Homooligomer Protein × 180 PDB declaration: 180-meric（180） Consistent with protein copy count | Chain C； UniProt 1–190 Chain D； UniProt 1–190 Chain I； UniProt 1–190 | Not recorded | No other associated polymer | ELECTRON MICROSCOPY cryo-EM buffer：pH 5 cryo-EM vitrification conditions：Cryogen ETHANE | Resolution 1.64 Å |
Other States of the Same Protein in the Database
Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.
| Other PDB | Difference from Current Entry 8C38 | Assembly / Oligomeric State | Construct | Mutations and Modifications | Ligands, Ions and Non-polymers | Method and Experimental Conditions | Structure Quality |
|---|---|---|---|---|---|---|---|
| 1CWP STRUCTURES OF THE NATIVE AND SWOLLEN FORMS OF COWPEA CHLOROTIC MOTTLE VIRUS DETERMINED BY X-RAY CRYSTALLOGRAPHY AND CRYO-ELECTRON MICROSCOPY Deposited 1995-05-22 | Different construct Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein–RNA Homooligomer；Protein × 180 PDB declaration: 360-MERIC |
Chain A
1–189（189 aa）
Chain B
1–189（189 aa）
Chain C
1–189（189 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 3.20 Å |
| 1CWP STRUCTURES OF THE NATIVE AND SWOLLEN FORMS OF COWPEA CHLOROTIC MOTTLE VIRUS DETERMINED BY X-RAY CRYSTALLOGRAPHY AND CRYO-ELECTRON MICROSCOPY Deposited 1995-05-22 | Different construct Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 2 Protein–RNA Homooligomer；Protein × 3 PDB declaration: hexameric |
Chain A
1–189（189 aa）
Chain B
1–189（189 aa）
Chain C
1–189（189 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 3.20 Å |
| 1CWP STRUCTURES OF THE NATIVE AND SWOLLEN FORMS OF COWPEA CHLOROTIC MOTTLE VIRUS DETERMINED BY X-RAY CRYSTALLOGRAPHY AND CRYO-ELECTRON MICROSCOPY Deposited 1995-05-22 | Different construct Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 3 Protein–RNA Homooligomer；Protein × 15 PDB declaration: 30-meric |
Chain A
1–189（189 aa）
Chain B
1–189（189 aa）
Chain C
1–189（189 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 3.20 Å |
| 1CWP STRUCTURES OF THE NATIVE AND SWOLLEN FORMS OF COWPEA CHLOROTIC MOTTLE VIRUS DETERMINED BY X-RAY CRYSTALLOGRAPHY AND CRYO-ELECTRON MICROSCOPY Deposited 1995-05-22 | Different construct Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 4 Protein–RNA Homooligomer；Protein × 18 PDB declaration: 36-meric |
Chain A
1–189（189 aa）
Chain B
1–189（189 aa）
Chain C
1–189（189 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 3.20 Å |
| 1CWP STRUCTURES OF THE NATIVE AND SWOLLEN FORMS OF COWPEA CHLOROTIC MOTTLE VIRUS DETERMINED BY X-RAY CRYSTALLOGRAPHY AND CRYO-ELECTRON MICROSCOPY Deposited 1995-05-22 | Different construct Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 5 Protein–RNA Homooligomer；Protein × 3 PDB declaration: hexameric |
Chain A
1–189（189 aa）
Chain B
1–189（189 aa）
Chain C
1–189（189 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 3.20 Å |
| 1CWP STRUCTURES OF THE NATIVE AND SWOLLEN FORMS OF COWPEA CHLOROTIC MOTTLE VIRUS DETERMINED BY X-RAY CRYSTALLOGRAPHY AND CRYO-ELECTRON MICROSCOPY Deposited 1995-05-22 | Different construct Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 6 Protein–RNA Homooligomer；Protein × 180 PDB declaration: 360-meric |
Chain A
1–189（189 aa）
Chain B
1–189（189 aa）
Chain C
1–189（189 aa）
|
Not recorded | No recorded non-water small molecule | X-RAY DIFFRACTION mmCIF provides none of the parsed conditions | Resolution 3.20 Å |
| 1ZA7 The crystal structure of salt stable cowpea cholorotic mottle virus at 2.7 angstroms resolution. Deposited 2005-04-05 | Different construct Different mutation/modification Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 180 PDB declaration: 180-MERIC |
Chain A
25–189（165 aa）
Chain B
25–189（165 aa）
Chain C
25–189（165 aa）
|
Mutation：K42R Mutation：K42R Mutation：K42R | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 3.3；298 K；0.3M succinate, 4% PEG 8000, pH 3.3, VAPOR DIFFUSION, SITTING DROP, temperature 298K, pH 3.30
|
Resolution 2.70 Å |
| 1ZA7 The crystal structure of salt stable cowpea cholorotic mottle virus at 2.7 angstroms resolution. Deposited 2005-04-05 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 2 Protein homooligomer Homooligomer；Protein × 3 PDB declaration: trimeric |
Chain A
25–189（165 aa）
Chain B
25–189（165 aa）
Chain C
25–189（165 aa）
|
Mutation：K42R Mutation：K42R Mutation：K42R | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 3.3；298 K；0.3M succinate, 4% PEG 8000, pH 3.3, VAPOR DIFFUSION, SITTING DROP, temperature 298K, pH 3.30
|
Resolution 2.70 Å |
| 1ZA7 The crystal structure of salt stable cowpea cholorotic mottle virus at 2.7 angstroms resolution. Deposited 2005-04-05 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 3 Protein homooligomer Homooligomer；Protein × 15 PDB declaration: pentadecameric |
Chain A
25–189（165 aa）
Chain B
25–189（165 aa）
Chain C
25–189（165 aa）
|
Mutation：K42R Mutation：K42R Mutation：K42R | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 3.3；298 K；0.3M succinate, 4% PEG 8000, pH 3.3, VAPOR DIFFUSION, SITTING DROP, temperature 298K, pH 3.30
|
Resolution 2.70 Å |
| 1ZA7 The crystal structure of salt stable cowpea cholorotic mottle virus at 2.7 angstroms resolution. Deposited 2005-04-05 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 4 Protein homooligomer Homooligomer；Protein × 18 PDB declaration: octadecameric |
Chain A
25–189（165 aa）
Chain B
25–189（165 aa）
Chain C
25–189（165 aa）
|
Mutation：K42R Mutation：K42R Mutation：K42R | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 3.3；298 K；0.3M succinate, 4% PEG 8000, pH 3.3, VAPOR DIFFUSION, SITTING DROP, temperature 298K, pH 3.30
|
Resolution 2.70 Å |
| 1ZA7 The crystal structure of salt stable cowpea cholorotic mottle virus at 2.7 angstroms resolution. Deposited 2005-04-05 | Different construct Different mutation/modification Different oligomeric state Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 5 Protein homooligomer Homooligomer；Protein × 3 PDB declaration: trimeric |
Chain A
25–189（165 aa）
Chain B
25–189（165 aa）
Chain C
25–189（165 aa）
|
Mutation：K42R Mutation：K42R Mutation：K42R | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 3.3；298 K；0.3M succinate, 4% PEG 8000, pH 3.3, VAPOR DIFFUSION, SITTING DROP, temperature 298K, pH 3.30
|
Resolution 2.70 Å |
| 1ZA7 The crystal structure of salt stable cowpea cholorotic mottle virus at 2.7 angstroms resolution. Deposited 2005-04-05 | Different construct Different mutation/modification Different experimental method Different experimental conditions Different structure-quality metrics | Assembly 6 Protein homooligomer Homooligomer；Protein × 180 PDB declaration: 180-meric |
Chain A
25–189（165 aa）
Chain B
25–189（165 aa）
Chain C
25–189（165 aa）
|
Mutation：K42R Mutation：K42R Mutation：K42R | No recorded non-water small molecule |
X-RAY DIFFRACTION
X-ray crystallization conditions
pH 3.3；298 K；0.3M succinate, 4% PEG 8000, pH 3.3, VAPOR DIFFUSION, SITTING DROP, temperature 298K, pH 3.30
|
Resolution 2.70 Å |
| 8CPY Extended cowpea chlorotic mottle virus Deposited 2023-03-03 | Different experimental conditions Different structure-quality metrics | Assembly 1 Protein homooligomer Homooligomer；Protein × 180 PDB declaration: 180-meric |
Chain C
1–190（190 aa）
Chain D
1–190（190 aa）
Chain I
1–190（190 aa）
|
Not recorded | No recorded non-water small molecule |
ELECTRON MICROSCOPY
cryo-EM buffer
pH 4.5
cryo-EM vitrification conditions
Cryogen ETHANE
|
Resolution 3.90 Å |
3 other PDB entries and 13 assemblies. Open the comparison page and filter oligomeric states
View Construct and Data Evidence
| UniProt name | CAPSD_CCMV |
| Isoform | — |
| PDB entities | 1 |
| Chains and sequence ranges | Author chain C； PDBConstruct 1–190； UniProt 1–190 Author chain D； PDBConstruct 1–190； UniProt 1–190 Author chain I； PDBConstruct 1–190； UniProt 1–190 |
