8d8j

Yeast mitochondrial small subunit assembly intermediate (State 1)

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Probable S-adenosyl-L-methionine-dependent RNA methyltransferase RSM22, mitochondrial

OrganismNot specified

UniProt P36056

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 15 RNA 1 37S ribosomal protein MRP13, mitochondrial × 1 (P12686) Mitochondrial group I intron splicing factor CCM1 × 1 (A0A8H4FBQ6) 37S ribosomal protein S28, mitochondrial × 1 (P21771) 37S ribosomal protein S16, mitochondrial × 1 (Q02608) 37S ribosomal protein S17, mitochondrial × 1 (Q03246) 37S ribosomal protein RSM18, mitochondrial × 1 (P40033) 37S ribosomal protein PET123, mitochondrial × 1 (P17558) Protein FYV4, mitochondrial × 1 (P38783) 37S ribosomal protein NAM9, mitochondrial × 1 (P27929) 37S ribosomal protein S5, mitochondrial × 1 (P33759) 37S ribosomal protein MRP17, mitochondrial × 1 (P28778) 37S ribosomal protein S35, mitochondrial × 1 (P53292) 37S ribosomal protein S8, mitochondrial × 1 (Q03799) 15S ribosomal RNA × 1 uS12m × 1 (A0A6A5Q5F6) IRON/SULFUR CLUSTER × 1 MAGNESIUM ION × 29 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RT22_YEAST
Isoform —
PDB entities 1
Chains and sequence ranges Author chain 0; PDBConstruct 1–628; UniProt 1–628

37S ribosomal protein MRP13, mitochondrial

OrganismNot specified

UniProt P12686

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 15 RNA 1 Probable S-adenosyl-L-methionine-dependent RNA methyltransferase RSM22, mitochondrial × 1 (P36056) Mitochondrial group I intron splicing factor CCM1 × 1 (A0A8H4FBQ6) 37S ribosomal protein S28, mitochondrial × 1 (P21771) 37S ribosomal protein S16, mitochondrial × 1 (Q02608) 37S ribosomal protein S17, mitochondrial × 1 (Q03246) 37S ribosomal protein RSM18, mitochondrial × 1 (P40033) 37S ribosomal protein PET123, mitochondrial × 1 (P17558) Protein FYV4, mitochondrial × 1 (P38783) 37S ribosomal protein NAM9, mitochondrial × 1 (P27929) 37S ribosomal protein S5, mitochondrial × 1 (P33759) 37S ribosomal protein MRP17, mitochondrial × 1 (P28778) 37S ribosomal protein S35, mitochondrial × 1 (P53292) 37S ribosomal protein S8, mitochondrial × 1 (Q03799) 15S ribosomal RNA × 1 uS12m × 1 (A0A6A5Q5F6) IRON/SULFUR CLUSTER × 1 MAGNESIUM ION × 29 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RT13_YEAST
Isoform —
PDB entities 2
Chains and sequence ranges Author chain 5; PDBConstruct 1–339; UniProt 1–339

Mitochondrial group I intron splicing factor CCM1

OrganismNot specified

UniProt A0A8H4FBQ6

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 15 RNA 1 Probable S-adenosyl-L-methionine-dependent RNA methyltransferase RSM22, mitochondrial × 1 (P36056) 37S ribosomal protein MRP13, mitochondrial × 1 (P12686) 37S ribosomal protein S28, mitochondrial × 1 (P21771) 37S ribosomal protein S16, mitochondrial × 1 (Q02608) 37S ribosomal protein S17, mitochondrial × 1 (Q03246) 37S ribosomal protein RSM18, mitochondrial × 1 (P40033) 37S ribosomal protein PET123, mitochondrial × 1 (P17558) Protein FYV4, mitochondrial × 1 (P38783) 37S ribosomal protein NAM9, mitochondrial × 1 (P27929) 37S ribosomal protein S5, mitochondrial × 1 (P33759) 37S ribosomal protein MRP17, mitochondrial × 1 (P28778) 37S ribosomal protein S35, mitochondrial × 1 (P53292) 37S ribosomal protein S8, mitochondrial × 1 (Q03799) 15S ribosomal RNA × 1 uS12m × 1 (A0A6A5Q5F6) IRON/SULFUR CLUSTER × 1 MAGNESIUM ION × 29 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A8H4FBQ6_YEASX
Isoform —
PDB entities 3
Chains and sequence ranges Author chain d; PDBConstruct 1–864; UniProt 1–864

37S ribosomal protein S28, mitochondrial

OrganismNot specified

UniProt P21771

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 15 RNA 1 Probable S-adenosyl-L-methionine-dependent RNA methyltransferase RSM22, mitochondrial × 1 (P36056) 37S ribosomal protein MRP13, mitochondrial × 1 (P12686) Mitochondrial group I intron splicing factor CCM1 × 1 (A0A8H4FBQ6) 37S ribosomal protein S16, mitochondrial × 1 (Q02608) 37S ribosomal protein S17, mitochondrial × 1 (Q03246) 37S ribosomal protein RSM18, mitochondrial × 1 (P40033) 37S ribosomal protein PET123, mitochondrial × 1 (P17558) Protein FYV4, mitochondrial × 1 (P38783) 37S ribosomal protein NAM9, mitochondrial × 1 (P27929) 37S ribosomal protein S5, mitochondrial × 1 (P33759) 37S ribosomal protein MRP17, mitochondrial × 1 (P28778) 37S ribosomal protein S35, mitochondrial × 1 (P53292) 37S ribosomal protein S8, mitochondrial × 1 (Q03799) 15S ribosomal RNA × 1 uS12m × 1 (A0A6A5Q5F6) IRON/SULFUR CLUSTER × 1 MAGNESIUM ION × 29 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RT28_YEAST
Isoform —
PDB entities 4
Chains and sequence ranges Author chain O; PDBConstruct 1–286; UniProt 1–286

37S ribosomal protein S16, mitochondrial

OrganismNot specified

UniProt Q02608

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 15 RNA 1 Probable S-adenosyl-L-methionine-dependent RNA methyltransferase RSM22, mitochondrial × 1 (P36056) 37S ribosomal protein MRP13, mitochondrial × 1 (P12686) Mitochondrial group I intron splicing factor CCM1 × 1 (A0A8H4FBQ6) 37S ribosomal protein S28, mitochondrial × 1 (P21771) 37S ribosomal protein S17, mitochondrial × 1 (Q03246) 37S ribosomal protein RSM18, mitochondrial × 1 (P40033) 37S ribosomal protein PET123, mitochondrial × 1 (P17558) Protein FYV4, mitochondrial × 1 (P38783) 37S ribosomal protein NAM9, mitochondrial × 1 (P27929) 37S ribosomal protein S5, mitochondrial × 1 (P33759) 37S ribosomal protein MRP17, mitochondrial × 1 (P28778) 37S ribosomal protein S35, mitochondrial × 1 (P53292) 37S ribosomal protein S8, mitochondrial × 1 (Q03799) 15S ribosomal RNA × 1 uS12m × 1 (A0A6A5Q5F6) IRON/SULFUR CLUSTER × 1 MAGNESIUM ION × 29 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RT16_YEAST
Isoform —
PDB entities 5
Chains and sequence ranges Author chain P; PDBConstruct 1–121; UniProt 1–121

37S ribosomal protein S17, mitochondrial

OrganismNot specified

UniProt Q03246

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 15 RNA 1 Probable S-adenosyl-L-methionine-dependent RNA methyltransferase RSM22, mitochondrial × 1 (P36056) 37S ribosomal protein MRP13, mitochondrial × 1 (P12686) Mitochondrial group I intron splicing factor CCM1 × 1 (A0A8H4FBQ6) 37S ribosomal protein S28, mitochondrial × 1 (P21771) 37S ribosomal protein S16, mitochondrial × 1 (Q02608) 37S ribosomal protein RSM18, mitochondrial × 1 (P40033) 37S ribosomal protein PET123, mitochondrial × 1 (P17558) Protein FYV4, mitochondrial × 1 (P38783) 37S ribosomal protein NAM9, mitochondrial × 1 (P27929) 37S ribosomal protein S5, mitochondrial × 1 (P33759) 37S ribosomal protein MRP17, mitochondrial × 1 (P28778) 37S ribosomal protein S35, mitochondrial × 1 (P53292) 37S ribosomal protein S8, mitochondrial × 1 (Q03799) 15S ribosomal RNA × 1 uS12m × 1 (A0A6A5Q5F6) IRON/SULFUR CLUSTER × 1 MAGNESIUM ION × 29 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RT17_YEAST
Isoform —
PDB entities 6
Chains and sequence ranges Author chain Q; PDBConstruct 1–237; UniProt 1–237

37S ribosomal protein RSM18, mitochondrial

OrganismNot specified

UniProt P40033

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 15 RNA 1 Probable S-adenosyl-L-methionine-dependent RNA methyltransferase RSM22, mitochondrial × 1 (P36056) 37S ribosomal protein MRP13, mitochondrial × 1 (P12686) Mitochondrial group I intron splicing factor CCM1 × 1 (A0A8H4FBQ6) 37S ribosomal protein S28, mitochondrial × 1 (P21771) 37S ribosomal protein S16, mitochondrial × 1 (Q02608) 37S ribosomal protein S17, mitochondrial × 1 (Q03246) 37S ribosomal protein PET123, mitochondrial × 1 (P17558) Protein FYV4, mitochondrial × 1 (P38783) 37S ribosomal protein NAM9, mitochondrial × 1 (P27929) 37S ribosomal protein S5, mitochondrial × 1 (P33759) 37S ribosomal protein MRP17, mitochondrial × 1 (P28778) 37S ribosomal protein S35, mitochondrial × 1 (P53292) 37S ribosomal protein S8, mitochondrial × 1 (Q03799) 15S ribosomal RNA × 1 uS12m × 1 (A0A6A5Q5F6) IRON/SULFUR CLUSTER × 1 MAGNESIUM ION × 29 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RSM18_YEAST
Isoform —
PDB entities 7
Chains and sequence ranges Author chain R; PDBConstruct 1–138; UniProt 1–138

37S ribosomal protein PET123, mitochondrial

OrganismNot specified

UniProt P17558

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 15 RNA 1 Probable S-adenosyl-L-methionine-dependent RNA methyltransferase RSM22, mitochondrial × 1 (P36056) 37S ribosomal protein MRP13, mitochondrial × 1 (P12686) Mitochondrial group I intron splicing factor CCM1 × 1 (A0A8H4FBQ6) 37S ribosomal protein S28, mitochondrial × 1 (P21771) 37S ribosomal protein S16, mitochondrial × 1 (Q02608) 37S ribosomal protein S17, mitochondrial × 1 (Q03246) 37S ribosomal protein RSM18, mitochondrial × 1 (P40033) Protein FYV4, mitochondrial × 1 (P38783) 37S ribosomal protein NAM9, mitochondrial × 1 (P27929) 37S ribosomal protein S5, mitochondrial × 1 (P33759) 37S ribosomal protein MRP17, mitochondrial × 1 (P28778) 37S ribosomal protein S35, mitochondrial × 1 (P53292) 37S ribosomal protein S8, mitochondrial × 1 (Q03799) 15S ribosomal RNA × 1 uS12m × 1 (A0A6A5Q5F6) IRON/SULFUR CLUSTER × 1 MAGNESIUM ION × 29 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RTPT_YEAST
Isoform —
PDB entities 8
Chains and sequence ranges Author chain V; PDBConstruct 1–318; UniProt 1–318

Protein FYV4, mitochondrial

OrganismNot specified

UniProt P38783

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 15 RNA 1 Probable S-adenosyl-L-methionine-dependent RNA methyltransferase RSM22, mitochondrial × 1 (P36056) 37S ribosomal protein MRP13, mitochondrial × 1 (P12686) Mitochondrial group I intron splicing factor CCM1 × 1 (A0A8H4FBQ6) 37S ribosomal protein S28, mitochondrial × 1 (P21771) 37S ribosomal protein S16, mitochondrial × 1 (Q02608) 37S ribosomal protein S17, mitochondrial × 1 (Q03246) 37S ribosomal protein RSM18, mitochondrial × 1 (P40033) 37S ribosomal protein PET123, mitochondrial × 1 (P17558) 37S ribosomal protein NAM9, mitochondrial × 1 (P27929) 37S ribosomal protein S5, mitochondrial × 1 (P33759) 37S ribosomal protein MRP17, mitochondrial × 1 (P28778) 37S ribosomal protein S35, mitochondrial × 1 (P53292) 37S ribosomal protein S8, mitochondrial × 1 (Q03799) 15S ribosomal RNA × 1 uS12m × 1 (A0A6A5Q5F6) IRON/SULFUR CLUSTER × 1 MAGNESIUM ION × 29 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name FYV4_YEAST
Isoform —
PDB entities 9
Chains and sequence ranges Author chain 2; PDBConstruct 1–130; UniProt 1–130

37S ribosomal protein NAM9, mitochondrial

OrganismNot specified

UniProt P27929

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 15 RNA 1 Probable S-adenosyl-L-methionine-dependent RNA methyltransferase RSM22, mitochondrial × 1 (P36056) 37S ribosomal protein MRP13, mitochondrial × 1 (P12686) Mitochondrial group I intron splicing factor CCM1 × 1 (A0A8H4FBQ6) 37S ribosomal protein S28, mitochondrial × 1 (P21771) 37S ribosomal protein S16, mitochondrial × 1 (Q02608) 37S ribosomal protein S17, mitochondrial × 1 (Q03246) 37S ribosomal protein RSM18, mitochondrial × 1 (P40033) 37S ribosomal protein PET123, mitochondrial × 1 (P17558) Protein FYV4, mitochondrial × 1 (P38783) 37S ribosomal protein S5, mitochondrial × 1 (P33759) 37S ribosomal protein MRP17, mitochondrial × 1 (P28778) 37S ribosomal protein S35, mitochondrial × 1 (P53292) 37S ribosomal protein S8, mitochondrial × 1 (Q03799) 15S ribosomal RNA × 1 uS12m × 1 (A0A6A5Q5F6) IRON/SULFUR CLUSTER × 1 MAGNESIUM ION × 29 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name NAM9_YEAST
Isoform —
PDB entities 10
Chains and sequence ranges Author chain D; PDBConstruct 1–486; UniProt 1–486

37S ribosomal protein S5, mitochondrial

OrganismNot specified

UniProt P33759

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 15 RNA 1 Probable S-adenosyl-L-methionine-dependent RNA methyltransferase RSM22, mitochondrial × 1 (P36056) 37S ribosomal protein MRP13, mitochondrial × 1 (P12686) Mitochondrial group I intron splicing factor CCM1 × 1 (A0A8H4FBQ6) 37S ribosomal protein S28, mitochondrial × 1 (P21771) 37S ribosomal protein S16, mitochondrial × 1 (Q02608) 37S ribosomal protein S17, mitochondrial × 1 (Q03246) 37S ribosomal protein RSM18, mitochondrial × 1 (P40033) 37S ribosomal protein PET123, mitochondrial × 1 (P17558) Protein FYV4, mitochondrial × 1 (P38783) 37S ribosomal protein NAM9, mitochondrial × 1 (P27929) 37S ribosomal protein MRP17, mitochondrial × 1 (P28778) 37S ribosomal protein S35, mitochondrial × 1 (P53292) 37S ribosomal protein S8, mitochondrial × 1 (Q03799) 15S ribosomal RNA × 1 uS12m × 1 (A0A6A5Q5F6) IRON/SULFUR CLUSTER × 1 MAGNESIUM ION × 29 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RT05_YEAST
Isoform —
PDB entities 11
Chains and sequence ranges Author chain E; PDBConstruct 1–307; UniProt 1–307

37S ribosomal protein MRP17, mitochondrial

OrganismNot specified

UniProt P28778

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 15 RNA 1 Probable S-adenosyl-L-methionine-dependent RNA methyltransferase RSM22, mitochondrial × 1 (P36056) 37S ribosomal protein MRP13, mitochondrial × 1 (P12686) Mitochondrial group I intron splicing factor CCM1 × 1 (A0A8H4FBQ6) 37S ribosomal protein S28, mitochondrial × 1 (P21771) 37S ribosomal protein S16, mitochondrial × 1 (Q02608) 37S ribosomal protein S17, mitochondrial × 1 (Q03246) 37S ribosomal protein RSM18, mitochondrial × 1 (P40033) 37S ribosomal protein PET123, mitochondrial × 1 (P17558) Protein FYV4, mitochondrial × 1 (P38783) 37S ribosomal protein NAM9, mitochondrial × 1 (P27929) 37S ribosomal protein S5, mitochondrial × 1 (P33759) 37S ribosomal protein S35, mitochondrial × 1 (P53292) 37S ribosomal protein S8, mitochondrial × 1 (Q03799) 15S ribosomal RNA × 1 uS12m × 1 (A0A6A5Q5F6) IRON/SULFUR CLUSTER × 1 MAGNESIUM ION × 29 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RT06_YEAST
Isoform —
PDB entities 12
Chains and sequence ranges Author chain F; PDBConstruct 1–131; UniProt 1–131

37S ribosomal protein S35, mitochondrial

OrganismNot specified

UniProt P53292

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 15 RNA 1 Probable S-adenosyl-L-methionine-dependent RNA methyltransferase RSM22, mitochondrial × 1 (P36056) 37S ribosomal protein MRP13, mitochondrial × 1 (P12686) Mitochondrial group I intron splicing factor CCM1 × 1 (A0A8H4FBQ6) 37S ribosomal protein S28, mitochondrial × 1 (P21771) 37S ribosomal protein S16, mitochondrial × 1 (Q02608) 37S ribosomal protein S17, mitochondrial × 1 (Q03246) 37S ribosomal protein RSM18, mitochondrial × 1 (P40033) 37S ribosomal protein PET123, mitochondrial × 1 (P17558) Protein FYV4, mitochondrial × 1 (P38783) 37S ribosomal protein NAM9, mitochondrial × 1 (P27929) 37S ribosomal protein S5, mitochondrial × 1 (P33759) 37S ribosomal protein MRP17, mitochondrial × 1 (P28778) 37S ribosomal protein S8, mitochondrial × 1 (Q03799) 15S ribosomal RNA × 1 uS12m × 1 (A0A6A5Q5F6) IRON/SULFUR CLUSTER × 1 MAGNESIUM ION × 29 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RT35_YEAST
Isoform —
PDB entities 13
Chains and sequence ranges Author chain 6; PDBConstruct 1–345; UniProt 1–345

37S ribosomal protein S8, mitochondrial

OrganismNot specified

UniProt Q03799

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 15 RNA 1 Probable S-adenosyl-L-methionine-dependent RNA methyltransferase RSM22, mitochondrial × 1 (P36056) 37S ribosomal protein MRP13, mitochondrial × 1 (P12686) Mitochondrial group I intron splicing factor CCM1 × 1 (A0A8H4FBQ6) 37S ribosomal protein S28, mitochondrial × 1 (P21771) 37S ribosomal protein S16, mitochondrial × 1 (Q02608) 37S ribosomal protein S17, mitochondrial × 1 (Q03246) 37S ribosomal protein RSM18, mitochondrial × 1 (P40033) 37S ribosomal protein PET123, mitochondrial × 1 (P17558) Protein FYV4, mitochondrial × 1 (P38783) 37S ribosomal protein NAM9, mitochondrial × 1 (P27929) 37S ribosomal protein S5, mitochondrial × 1 (P33759) 37S ribosomal protein MRP17, mitochondrial × 1 (P28778) 37S ribosomal protein S35, mitochondrial × 1 (P53292) 15S ribosomal RNA × 1 uS12m × 1 (A0A6A5Q5F6) IRON/SULFUR CLUSTER × 1 MAGNESIUM ION × 29 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name RT08_YEAST
Isoform —
PDB entities 14
Chains and sequence ranges Author chain H; PDBConstruct 1–155; UniProt 1–155

uS12m

OrganismNot specified

UniProt A0A6A5Q5F6

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein–RNA Heteromer Protein 15 RNA 1 Probable S-adenosyl-L-methionine-dependent RNA methyltransferase RSM22, mitochondrial × 1 (P36056) 37S ribosomal protein MRP13, mitochondrial × 1 (P12686) Mitochondrial group I intron splicing factor CCM1 × 1 (A0A8H4FBQ6) 37S ribosomal protein S28, mitochondrial × 1 (P21771) 37S ribosomal protein S16, mitochondrial × 1 (Q02608) 37S ribosomal protein S17, mitochondrial × 1 (Q03246) 37S ribosomal protein RSM18, mitochondrial × 1 (P40033) 37S ribosomal protein PET123, mitochondrial × 1 (P17558) Protein FYV4, mitochondrial × 1 (P38783) 37S ribosomal protein NAM9, mitochondrial × 1 (P27929) 37S ribosomal protein S5, mitochondrial × 1 (P33759) 37S ribosomal protein MRP17, mitochondrial × 1 (P28778) 37S ribosomal protein S35, mitochondrial × 1 (P53292) 37S ribosomal protein S8, mitochondrial × 1 (Q03799) 15S ribosomal RNA × 1 IRON/SULFUR CLUSTER × 1 MAGNESIUM ION × 29 Consistent with all polymers

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name A0A6A5Q5F6_YEASX
Isoform —
PDB entities 16
Chains and sequence ranges Author chain L; PDBConstruct 1–153; UniProt 1–153

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id8d8j
Deposition date deposition_date2022-06-08
Structure title titleYeast mitochondrial small subunit assembly intermediate (State 1)
Keywords keywordsRibonucleoprotein complex Mitochondria Biogenesis, RIBOSOME; RIBOSOME
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

8d8j__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

8d8j__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 1010 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

8d8j__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)69.27 Å
Rg (electron density)69.65 Å
Total Rg69.62 Å
Atom count51386
Residues4585
Excluded volume823240 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 8d8j__assembly_1__model_1 hexadecameric (16) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (18)

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6. Fold Classification (SCOP + CATH) 1 domains

CATH v4.4 (1 domains)

Domain ID domain_id8d8jF01
Class class3 — Alpha Beta
Architecture architecture30 — 2-Layer Sandwich
Topology topology70 — Alpha-Beta Plaits
Homologous superfamily homologous superfamily60 — Ribosomal protein S6/Translation elongation factor EF1B
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7. Citations (1)