8don

Beta-lactamase CTX-M-14 T215A

Method: X-RAY DIFFRACTION Dmax: 61.0 Å Quality: REASONABLE

1. Protein Identity and Related Structures Protein Identity & Related Structures

Beta-lactamase

Escherichia coli

UniProt H6UQI0

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain A; UniProt 23–284 Mutation:T215A PO4 PHOSPHATE ION × 1 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;298 K;0.2 M Calcium chloride ,0.1 M HEPES pH 7, 20% (w/v) PEG 6000 Resolution 1.36 Å R-free 0.160

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

16 other PDB entries and 25 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name H6UQI0_ECOLX
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–262; UniProt 23–284

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 8don

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 8don
Download Download

2. Structure Basics 2. Structure Basics

Entry ID entry_id8don
Deposition date deposition_date2022-07-13
Structure title titleBeta-lactamase CTX-M-14 T215A
Keywords keywordsBeta-lactamase, antibiotic resistance, Beta-lactam, CTX-M-14, HYDROLASE; HYDROLASE
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier18.43
Radius of gyration Rg (electron density) rg_electron17.43
Forward intensity I(0) i014511800.00
Molecular weight molecular_weight27912.0 kDa
Excluded volume excluded_volume34653 ų
Envelope volume envelope_volume37902 ų
Hydration-shell volume shell_volume18079 ų
Envelope diameter envelope_diameter60.9
Shell Rg shell_rg23.89
Envelope Rg envelope_rg17.78
Shape Rg shape_rg17.44
Total Rg total_rg18.31
Total atoms total_atoms3872
Residues n_residues262
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax61.0
Rg (real space) rg_real18.74
Rg uncertainty (real space) rg_real_error0.13
I(0) (real space) i0_real1.4310e+07
I(0) uncertainty (real space) i0_real_error1.4730e+05
Rg (reciprocal space) rg_reciprocal18.36
I(0) (reciprocal space) i0_reciprocal14510000.0000
Solution quality estimate total_estimate0.6766
Solution quality rating solution_quality REASONABLE a REASONABLE solution
P(r) peaks n_peaks1
Primary peak position r_peak_primary22.6
Skewness Skewness skewness0.360
Kurtosis Kurtosis kurtosis-0.023
Angular range angular_range— – 0.4300 −1
Current regularization parameter α current_alpha7.1150
Highest regularization parameter α highest_alpha3140000.0000
Real-space data points n_real_points74
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.828; Stabil: 0.929; Sysdev: 0.000; Positv: 1.000; Valcen: 0.999; Smooth: 0.560

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (3)

7. Fold Classification (SCOP + CATH) 1 domains

CATH v4.4 (1 domains)

Domain ID domain_id8donA01
Class class3 — Alpha Beta
Architecture architecture40 — 3-Layer(aba) Sandwich
Topology topology710 — Beta-lactamase
Homologous superfamily homologous superfamily10 — DD-peptidase/beta-lactamase superfamily

8. Citations (1)

9. Files and Curves (10)