8esc

Structure of the Yeast NuA4 Histone Acetyltransferase Complex

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Transcription-associated protein 1

OrganismNot specified

UniProt P38811

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 6 Actin-related protein 4 × 1 (P80428) Actin × 1 (P60010) Enhancer of polycomb-like protein 1 × 1 (P43572) Chromatin modification-related protein EAF1 × 1 (Q06337) SWR1-complex protein 4 × 1 (P53201) ADENOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name TRA1_YEAST
Isoform —
PDB entities 1
Chains and sequence ranges Author chain Z; PDBConstruct 1–3744; UniProt 1–3744

Actin-related protein 4

OrganismNot specified

UniProt P80428

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 6 Transcription-associated protein 1 × 1 (P38811) Actin × 1 (P60010) Enhancer of polycomb-like protein 1 × 1 (P43572) Chromatin modification-related protein EAF1 × 1 (Q06337) SWR1-complex protein 4 × 1 (P53201) ADENOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ARP4_YEAST
Isoform —
PDB entities 2
Chains and sequence ranges Author chain R; PDBConstruct 1–489; UniProt 1–489

Actin

OrganismNot specified

UniProt P60010

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 6 Transcription-associated protein 1 × 1 (P38811) Actin-related protein 4 × 1 (P80428) Enhancer of polycomb-like protein 1 × 1 (P43572) Chromatin modification-related protein EAF1 × 1 (Q06337) SWR1-complex protein 4 × 1 (P53201) ADENOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name ACT_YEAST
Isoform —
PDB entities 3
Chains and sequence ranges Author chain A; PDBConstruct 1–375; UniProt 1–375

Enhancer of polycomb-like protein 1

OrganismNot specified

UniProt P43572

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 6 Transcription-associated protein 1 × 1 (P38811) Actin-related protein 4 × 1 (P80428) Actin × 1 (P60010) Chromatin modification-related protein EAF1 × 1 (Q06337) SWR1-complex protein 4 × 1 (P53201) ADENOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name EPL1_YEAST
Isoform —
PDB entities 4
Chains and sequence ranges Author chain P; PDBConstruct 1–832; UniProt 1–832

Chromatin modification-related protein EAF1

OrganismNot specified

UniProt Q06337

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 6 Transcription-associated protein 1 × 1 (P38811) Actin-related protein 4 × 1 (P80428) Actin × 1 (P60010) Enhancer of polycomb-like protein 1 × 1 (P43572) SWR1-complex protein 4 × 1 (P53201) ADENOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name EAF1_YEAST
Isoform —
PDB entities 5
Chains and sequence ranges Author chain E; PDBConstruct 1–982; UniProt 1–982

SWR1-complex protein 4

OrganismNot specified

UniProt P53201

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 6 Transcription-associated protein 1 × 1 (P38811) Actin-related protein 4 × 1 (P80428) Actin × 1 (P60010) Enhancer of polycomb-like protein 1 × 1 (P43572) Chromatin modification-related protein EAF1 × 1 (Q06337) ADENOSINE-5'-TRIPHOSPHATE × 1 MAGNESIUM ION × 2 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name SWC4_YEAST
Isoform —
PDB entities 6
Chains and sequence ranges Author chain S; PDBConstruct 1–476; UniProt 1–476

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id8esc
Deposition date deposition_date2022-10-13
Structure title titleStructure of the Yeast NuA4 Histone Acetyltransferase Complex
Keywords keywordsHistone Acetyltransferase, NuA4, Yeast, TRANSCRIPTION; TRANSCRIPTION
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

8esc__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

8esc__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

8esc__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)70.41 Å
Rg (electron density)70.59 Å
Total Rg70.54 Å
Atom count43279
Residues5300
Excluded volume777050 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 8esc__assembly_1__model_1 hexameric (6) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (8)

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6. Fold Classification (SCOP + CATH) 1 domains

CATH v4.4 (1 domains)

Domain ID domain_id8escA01
Class class3 — Alpha Beta
Architecture architecture90 — Alpha-Beta Complex
Topology topology640 — Actin; Chain A, domain 4
Homologous superfamily homologous superfamily10 — ATPase, substrate binding domain, subdomain 4
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7. Citations (1)