8j8r

Structure of beta-arrestin2 in complex with M2Rpp

Method: ELECTRON MICROSCOPY Dmax: 140.2 Å Quality: EXCELLENT

1. Protein Identity and Related Structures Protein Identity & Related Structures

Beta-arrestin-2

Bos taurus

UniProt P32120

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 12 PDB declaration: dodecameric(12) Consistent with protein copy count Chain A; UniProt 1–420 Chain B; UniProt 1–420 Chain C; UniProt 1–420 Mutation:C17G,C60V,L69V,C126S,C141L,C151V,C243V,C252V,C270S,L278F,S280A Fab30 Heavy Chain × 3 Fab30 Light Chain × 3 Muscarinic acetylcholine receptor M2 × 3 (P08172) ELECTRON MICROSCOPY cryo-EM buffer:pH 7.4 cryo-EM vitrification conditions:Cryogen ETHANE Resolution 2.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

11 other PDB entries and 11 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name ARRB2_BOVIN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–420; UniProt 1–420 Author chain B; PDBConstruct 1–420; UniProt 1–420 Author chain C; PDBConstruct 1–420; UniProt 1–420

Muscarinic acetylcholine receptor M2

OrganismNot specified

UniProt P08172

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 12 PDB declaration: dodecameric(12) Consistent with protein copy count Chain G; UniProt 300–317 Chain U; UniProt 300–317 Chain V; UniProt 300–317 Fragment:ICL3 Non-standard monomer:Yes (specific site not provided by mmCIF) Beta-arrestin-2 × 3 (P32120) Fab30 Heavy Chain × 3 Fab30 Light Chain × 3 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.4 cryo-EM vitrification conditions:Cryogen ETHANE Resolution 2.90 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

16 other PDB entries and 16 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name ACM2_HUMAN
Isoform
PDB entities 4
Chains and sequence ranges Author chain G; PDBConstruct 1–18; UniProt 300–317 Author chain U; PDBConstruct 1–18; UniProt 300–317 Author chain V; PDBConstruct 1–18; UniProt 300–317

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 8j8r

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 8j8r
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2. Structure Basics 2. Structure Basics

Entry ID entry_id8j8r
Deposition date deposition_date2023-05-02
Structure title titleStructure of beta-arrestin2 in complex with M2Rpp
Keywords keywordsGPCR, Arrestin, SIGNALING PROTEIN, SIGNALING PROTEIN-IMMUNE SYSTEM complex; SIGNALING PROTEIN/IMMUNE SYSTEM
Experimental Method methodELECTRON MICROSCOPY

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier44.54
Radius of gyration Rg (electron density) rg_electron43.95
Forward intensity I(0) i0528885000.00
Molecular weight molecular_weight190190.0 kDa
Excluded volume excluded_volume238580 ų
Envelope volume envelope_volume343800 ų
Hydration-shell volume shell_volume65420 ų
Envelope diameter envelope_diameter138.7
Shell Rg shell_rg49.19
Envelope Rg envelope_rg42.55
Shape Rg shape_rg43.93
Total Rg total_rg44.27
Total atoms total_atoms13424
Residues n_residues1724
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax140.2
Rg (real space) rg_real44.40
Rg uncertainty (real space) rg_real_error1.06
I(0) (real space) i0_real5.2890e+08
I(0) uncertainty (real space) i0_real_error8.5340e+06
Rg (reciprocal space) rg_reciprocal44.54
I(0) (reciprocal space) i0_reciprocal529000000.0000
Solution quality estimate total_estimate0.9036
Solution quality rating solution_quality EXCELLENT a EXCELLENT solution
P(r) peaks n_peaks1
Primary peak position r_peak_primary52.1
Skewness Skewness skewness0.143
Kurtosis Kurtosis kurtosis-0.690
Angular range angular_range— – 0.1750 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha42670000.0000
Real-space data points n_real_points36
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.961; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 1.000; Smooth: 0.858

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (4)

8. Citations (1)

9. Files and Curves (10)