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8k0d

Cryo-EM structure of conformation 2 of complex of Nipah virus attachment G with 1E5 neutralizing antibody

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Glycoprotein G

Nipah virus

UniProt Q9IH62

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 6 The heavy chain of 1E5 × 2 The light chain of 1E5 × 2 Consistent with protein count

Other States of the Same Protein in the Database

Monomer
2vwd 2vwd

2 assemblies

Homodimer

None

Homotetramer

None

Other homooligomers

None

Heteromeric or nucleic-acid complex
2vsm 3d11 3d12 3d12 3d12 6vy5 7txz 7ty0 8ja5 8ja5 8k0c 8k0d

17 assemblies; showing the first 12

View Construct and Data Evidence
UniProt name GLYCP_NIPAV
Isoform —
PDB entities 3
Chains and sequence ranges Author chain A； PDBConstruct 1–402； UniProt 200–601 Author chain B； PDBConstruct 1–402； UniProt 200–601

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id8k0d
Deposition date deposition_date2023-07-08
Structure title titleCryo-EM structure of conformation 2 of complex of Nipah virus attachment G with 1E5 neutralizing antibody
Keywords keywordsHenipavirus, Attachment glycoprotein tetramer complex, neutralizing antibody, dynamic structures, VIRAL PROTEIN; VIRAL PROTEIN
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

8k0d__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

8k0d__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

8k0d__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）52.31 Å
Rg (electron density)52.39 Å
Total Rg52.28 Å
Atom count13282
Residues1714
Excluded volume235630 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 8k0d__assembly_1__model_1 hexameric （6） Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (3)

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7. Citations (1)