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8onu

Solution structure of thanatin analogue 7 in complex with LptAm(Ab)1.0

Method: SOLUTION NMR
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Lipopolysaccharide export system protein LptA

Acinetobacter baumannii

UniProt V5VEZ9

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 2 Thanatin-like derivative × 1 （P55788） Consistent with protein count

Other States of the Same Protein in the Database

Monomer

None

Homodimer

None

Homotetramer

None

Other homooligomers

None

Heteromeric or nucleic-acid complex
8onu

1 assemblies

View Construct and Data Evidence
UniProt name V5VEZ9_ACIBA
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A； PDBConstruct 2–133； UniProt 33–164

Thanatin-like derivative

OrganismNot specified

UniProt P55788

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 2 Lipopolysaccharide export system protein LptA × 1 （V5VEZ9） Consistent with protein count

Other States of the Same Protein in the Database

Monomer
5xo3 5xo4 5xo5 6aab 6afq 8tfv 8xth

7 assemblies

Homodimer
5xo9 5xoa 5xok 5xol

4 assemblies

Homotetramer

None

Other homooligomers

None

Heteromeric or nucleic-acid complex
6gd5 7qs6 7zax 7zed 8bss 8gaj 8onu

7 assemblies

View Construct and Data Evidence
UniProt name THAN_PODMA
Isoform —
PDB entities 2
Chains and sequence ranges Author chain B； PDBConstruct 1–16； UniProt 6–21

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id8onu
Deposition date deposition_date2023-04-04
Structure title titleSolution structure of thanatin analogue 7 in complex with LptAm(Ab)1.0
Keywords keywordsSTRUCTURE FROM CYANA 3.98.13, ANTIBIOTIC; ANTIBIOTIC
Experimental Method methodSOLUTION NMR
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

8onu__assembly_1__model_4

Assembly 1 · Model 4 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

8onu__assembly_1__model_4 | I(q)

10-2 10-1 105 106 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

8onu__assembly_1__model_4 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）18.05 Å
Rg (electron density)16.78 Å
Total Rg17.78 Å
Atom count2286
Residues143
Excluded volume20056 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 8onu__assembly_1__model_1 dimeric （2） Success 4.1.3-1-20251215 (887e7ef) View Download
1 2 8onu__assembly_1__model_2 dimeric （2） Success 4.1.3-1-20251215 (887e7ef) View Download
1 3 8onu__assembly_1__model_3 dimeric （2） Success 4.1.3-1-20251215 (887e7ef) View Download
1 4 8onu__assembly_1__model_4 dimeric （2） Success 4.1.3-1-20251215 (887e7ef) View Download
1 5 8onu__assembly_1__model_5 dimeric （2） Success 4.1.3-1-20251215 (887e7ef) View Download
1 6 8onu__assembly_1__model_6 dimeric （2） Success 4.1.3-1-20251215 (887e7ef) View Download
1 7 8onu__assembly_1__model_7 dimeric （2） Success 4.1.3-1-20251215 (887e7ef) View Download
1 8 8onu__assembly_1__model_8 dimeric （2） Success 4.1.3-1-20251215 (887e7ef) View Download
1 9 8onu__assembly_1__model_9 dimeric （2） Success 4.1.3-1-20251215 (887e7ef) View Download
1 10 8onu__assembly_1__model_10 dimeric （2） Success 4.1.3-1-20251215 (887e7ef) View Download
1 11 8onu__assembly_1__model_11 dimeric （2） Success 4.1.3-1-20251215 (887e7ef) View Download
1 12 8onu__assembly_1__model_12 dimeric （2） Success 4.1.3-1-20251215 (887e7ef) View Download
1 13 8onu__assembly_1__model_13 dimeric （2） Success 4.1.3-1-20251215 (887e7ef) View Download
1 14 8onu__assembly_1__model_14 dimeric （2） Success 4.1.3-1-20251215 (887e7ef) View Download
1 15 8onu__assembly_1__model_15 dimeric （2） Success 4.1.3-1-20251215 (887e7ef) View Download
1 16 8onu__assembly_1__model_16 dimeric （2） Success 4.1.3-1-20251215 (887e7ef) View Download
1 17 8onu__assembly_1__model_17 dimeric （2） Success 4.1.3-1-20251215 (887e7ef) View Download
1 18 8onu__assembly_1__model_18 dimeric （2） Success 4.1.3-1-20251215 (887e7ef) View Download
1 19 8onu__assembly_1__model_19 dimeric （2） Success 4.1.3-1-20251215 (887e7ef) View Download
1 20 8onu__assembly_1__model_20 dimeric （2） Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (2)

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6. Fold Classification (SCOP + CATH) 1 domains

CATH v4.4 (1 domains)

Domain ID domain_id8onuA01
Class class2 — Mainly Beta
Architecture architecture60 — Sandwich
Topology topology450 — lipopolysaccharide transport protein A fold
Homologous superfamily homologous superfamily10 — Lipopolysaccharide (LPS) transport protein A like domain
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7. Citations (1)