8p6p

Mycoplasma pneumoniae small ribosomal subunit in chloramphenicol-treated cells

Method: ELECTRON MICROSCOPY D_max: 214.7 Å Quality: GOOD

SAXS 散射曲线 SAXS Profile

P(r) 距离分布 P(r) Distribution

下载 Download SAXS (.dat) P(r) (.pr.out) CIF

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1. 结构基本信息 1. Structure Basics

条目编号 entry_id	8p6p
沉积日期 deposition_date	2023-05-27
结构标题 title	Mycoplasma pneumoniae small ribosomal subunit in chloramphenicol-treated cells
关键词 keywords	In situ, Ribosome, Chloramphenicol, cryo-ET, TRANSLATION; TRANSLATION
实验方法 method	ELECTRON MICROSCOPY

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2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)

回转半径 Rg (Guinier) rg_guinier	65.34 Å
回转半径 Rg (电子) rg_electron	65.90 Å
零角强度 I(0) i0	20617900000.00
分子量 molecular_weight	822010.0 kDa
排除体积 excluded_volume	865180 Å³
包络体积 envelope_volume	1416900 Å³
水化壳体积 shell_volume	174320 Å³
包络直径 envelope_diameter	234.9 Å
壳层 Rg shell_rg	69.49 Å
包络 Rg envelope_rg	65.34 Å
形状 Rg shape_rg	65.92 Å
总 Rg total_rg	65.91 Å
总原子数 total_atoms	55463
残基数 n_residues	4204
球谐函数阶数 n_harmonics	20
q 范围 q_range	— – 0.5000 Å⁻¹
数据点数 n_points	101
壳层类型 shell_type	directional
溶剂电子密度 solvent_density	0.3340 e/Å³
壳层衬度 contrast_shell	0.0300 e/Å³
CRYSOL 版本 crysol_version	4.1.3

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3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)

最大尺寸 Dmax dmax	214.7 Å
Rg (实空间) rg_real	65.47 Å
Rg 误差 (实空间) rg_real_error	2.50 Å
I(0) (实空间) i0_real	2.0620e+10
I(0) 误差 (实空间) i0_real_error	4.5970e+08
Rg (倒空间) rg_reciprocal	65.19 Å
I(0) (倒空间) i0_reciprocal	20610000000.0000
解质量估计 total_estimate	0.8449
解质量评级 solution_quality	GOOD a GOOD solution
P(r) 峰数 n_peaks	2
主峰位置 r_peak_primary	71.6 Å
偏度 Skewness skewness	0.420
峰度 Kurtosis kurtosis	-0.275
角度范围 angular_range	— – 0.1200 Å⁻¹
当前正则化参数 α current_alpha	0.0000
最高正则化参数 α highest_alpha	2393000000.0000
实空间数据点数 n_real_points	25
GNOM 版本 gnom_version	4.1.3
质量判据 quality_criteria	AN1: 0.000; Oscil: 0.871; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.991; Smooth: 0.376

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4. 晶体学与实验 4. Crystallography & Experiment

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5. 实体与聚合体信息 (32)

Entity 1 polymer

描述 description	23S ribosomal RNA
分子量 formula_weight	940911.5 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polyribonucleotide
链编号 strand_id	3
原子数 atom_count	55465

UACAAUAAGUUACUAAGGGCUUAUGGUGGAUGCCUUGGCACUAAUAGGCGAUGAAGGACGUGUUAACCUGCGAUAAGCUUCGGGUAGGUGGUAAGAACCUCAGAUCCGGAGAUUUCCGAAUGGAGCAAUCCGGUAGUUGGAAACAGCUAUCAUUAAUUGAUGAAUAAAUAGUCAAUUAAAGCAAUACGUGGUGAAGUGAAACAUCUCAGUAGCCACAGGAAAAGAAAACGAAUGUGAUUCCGUGUGUAGUGGCGAGCGAAAGCGGAACAGGCCAAACUUAUCAUUAGAUAGGGGUUGUAGGGCUUGCAAUGUGGACUUGAAAACGAUAGAAGAAGCUGUUGGAAAGCAGCGCGCAAAAGGGUGAUAGCCCCGUAUUUGAAAUUGUUUUCAUACCUAGCGAGAUCCCUGAGUAGCUCGGAAAACGUUAUUUUGAGUGAAUCUGCCCAGACCAUUGGGUAAGCCUAAAUACUAAUUAGUGACCGAUAGCGAAACAGUACCGUGAGGGAAAGGUGAAAAGAACCCAGAGAUGGGAGUGAAAUAGAUUCUGAAACCAUAUGCCUACAACGUGUCAGAGCACAUUAAUGUGUGAUGGCGUGCGUUUUGAAGUAUGAGCCGGCGAGUUAUGAUAGCAAGCGUUAGUUAACCAGGAGAUGGGGAGCUGUAGCGAAAGCGAGUUUUAAAAGAGCGUUUGUUUGUUAUUAUAGACCCGAAACGGGUUGAGCUAGUCAUGAGCAGGUUGAAGGUUGAGUAACAUCAACUGGAGGACCGAACCGACUCUCGUUGAAACGAUAGCGGAUGACUUGUGAUUAGGGGUGAAAUUCCAAUCGAAAUCCGUGAUAGCUGGUUCUCGUCGAAAUAGCUUUAAGGCUAGCGUGAGAUCACAAAUAAGUGGAGGUAAAGCUACUGAAUGUAUGAUGGCGCCACCUAGGCGUACUGAAUACAAUUAAACUCUGAAUGCCAUUUAUUUUAUUCUCGCAGUCAGACAGUGGGGGAUAAGCUUCAUUGUCAAGAGGGGAAGAGCCCAGAUCAUUAAAUAAGGUCCCCAAAAUAUACUAAGUGGAAAAGGAUGUGAAAGUGCUAAAACAGCAAGGAUGUUGGCUUAGAAGCAGCCAUCGUUUAAAGAGUGCGUAACAGCUCACUUGUCGAGUGUUUUUGCGCCGAAGAUGUAACGGGGCUAAGUAUAUUACCGAAUUUAUGGAUAAGAUUUAUAUCUUGUGGUAGACGAGCGUUGUAUUGGAGUUGAAGUCAAAGCGUGAGCAUUGGUGGAUCCAAUACAAGUGAGAAUGCCGGCAUGAGUAACGCUUGGGAGUGAGAAUCUCCCAAACCGAUUGACUAAGGUUUCCUGGACCAGGGUCGUCCUUCCAGGGUUAGUCUGGACCUAAGCUGAGGCUGAAAAGCGUAGGCGAUGGACAACAGGUUAAUAUUCCUGUACUUACAGUUAGACUGAUGGAGUGACAAAGAAGGUUUUCCACCCCCAUAAUUGGAUUUGGGGAUAAAUCAUAAGGUGGUACAAUAGGCAAAUCCGUUGUGCAUAACAUUGAGUGAUGAUGUCGAGUGAAUGAGUGAUCAAGUAGCGAAGGUGGUAUUAAUCAUGCUUUCAAGAAAAGCUUCUAGGGUUAAUCUAGCUGUAACCAGUACCGAGAACGAACACACGUAGUCAAGGAGAGGAUCCUAAGGUUAGCGAGUGAACUAUAGCCAAGGAACUCUGCAAAUUAACCCCGUAAGUUAGCGAGAAGGGGUGCUUAUGUAAAAGUAAGCCGCAGUGAAGAACGAGGGGGGACUGUUUAACUAAAACACAACUCUAUGCCAAACCGUAAGGUGAUGUAUAUGGGGUGACACCUGCCCAGUGCUGGAAGGUUAAAGAAGGAGGUUAGCGCAAGCGAAGCUUUUAACUGAAGCCCCAGUGAACGGCGGCCGUAACUAUAACGGUCCUAAGGUAGCGAAAUUCCUAGUCGGGUAAAUUCCGUCCCGCUUGAAUGGUGUAACCAUCUCUUGACUGUCUCGGCUAUAGACUCGGUGAAAUCCAGGUACGGGUGAAGACACCCGUUAGGCGCAACGGGACGGAAAGACCCCGUGAAGCUUUACUGUAGCUUAAUAUUGAUCAGGACAUUAUCAUGUAGAGAAUAGGUAGGAGCAAUCGAUGCAAGUUCGCUAGGACUUGUUGAUGCGAAAGGUGGAAUACUACCCUUGGUUGUGUGCUGUUCUAAUUGGUAACUGUUAUCCAGUUUCAAGACAGUGUUAGGUGGGCAGUUUGACUGGGGCGGUCGCCUCCUAAAAGGUAACGGAGGCGUACAAAGGUACCUUCAGUACGGUUGGAAAUCGUAUGUAGAGUGUAAUGGUGUAAGGGUGCUUGACUGUGAGACAUACAGGUCGAACAGGUGAGAAAUCAGGUCAUAGUGAUCCGGUGGUCCAGUAUGGAAUGGCCAUCGCUCAACGGAUAAAAGCUACUCCGGGGAUAACAGGCUGAUACUGCCCAAGAGUUCAUAUCGACGGCAGUGUUUGGCACCUCGAUGUCGACUCAUCUCAUCCUCGAGCUGAAGCAGGUUCGAAGGGUUCGGCUGUUCGCCGAUUAAAGAGAUACGUGAGUUGGGUUCAAACCGUCGUGAGACAGGUUGGUCCCUAUCUAUUGUGCCCGUAGGAAGAUUGAAGAGUGUUGCUUCUAGUACGAGAGGACCGAAGCGAGGACACCUCUUAUGCUCCAGUUGUAGCGCCAGCUGCACCGCUGGGUAGUAACGUGUCUAUUAGAUAAACGCUGAAAGCAUCUAAGUGUGAAACUAUCUCAAAGAUUAAUCUUCCCAUUUCGCAAGAAAGUAAGAGCCGUCAAAGACGAUGACGUUGAUAGGUUACAGGUGUAAGCAUAGUGAUAUGUUGAGCUGAGUAAUACUAAUUGCUCGAGGACUUAUUGGA

Entity 2 polymer

描述 description	16S ribosomal RNA
分子量 formula_weight	491326.8 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polyribonucleotide
链编号 strand_id	5

UUUUUCUGAGAGUUUGAUCCUGGCUCAGGAUUAACGCUGGCGGCAUGCCUAAUACAUGCAAGUCGAUCGAAAGUAGUAAUACUUUAGAGGCGAACGGGUGAGUAACACGUAUCCAAUCUACCUUAUAAUGGGGGAUAACUAGUUGAAAGACUAGCUAAUACCGCAUAAGAACUUUGGUUCGCAUGAAUCAAAGUUGAAAGGACCUGCAAGGGUUCGUUAUUUGAUGAGGGUGCGCCAUAUCAGCUAGUUGGUGGGGUAACGGCCUACCAAGGCAAUGACGUGUAGCUAUGCUGAGAAGUAGAAUAGCCACAAUGGGACUGAGACACGGCCCAUACUCCUACGGGAGGCAGCAGUAGGGAAUUUUUCACAAUGAGCGAAAGCUUGAUGGAGCAAUGCCGCGUGAACGAUGAAGGUCUUUAAGAUUGUAAAGUUCUUUUAUUUGGGAAGAAUGACUUUAGCAGGUAAUGGCUAGAGUUUGACUGUACCAUUUUGAAUAAGUGACGACUAACUAUGUGCCAGCAGUCGCGGUAAUACAUAGGUCGCAAGCGUUAUCCGGAUUUAUUGGGCGUAAAGCAAGCGCAGGCGGAUUGAAAAGUCUGGUGUUAAAGGCAGCUGCUUAACAGUUGUAUGCAUUGGAAACUAUUAAUCUAGAGUGUGGUAGGGAGUUUUGGAAUUUCAUGUGGAGCGGUGAAAUGCGUAGAUAUAUGAAGGAACACCAGUGGCGAAGGCGAAAACUUAGGCCAUUACUGACGCUUAGGCUUGAAAGUGUGGGGAGCAAAUAGGAUUAGAUACCCUAGUAGUCCACACCGUAAACGAUAGAUACUAGCUGUCGGGGCGAUCCCCUCGGUAGUGAAGUUAACACAUUAAGUAUCUCGCCUGGGUAGUACAUUCGCAAGAAUGAAACUCAAACGGAAUUGACGGGGACCCGCACAAGUGGUGGAGCAUGUUGCUUAAUUCGACGGUACACGAAAAACCUUACCUAGACUUGACAUCCUUGGCAAAAUUAUGGAAACAUAAUGGAGGUUAACCGAGUGACAGGUGGUGCAUGGUUGUCGUCAGCUCGUGUCGUGAGAUGUUGGGUUAAGUCCCGCAACGAGCGCAACCCUUAUCGUUAGUUACAUUGUCUAGCGAGACUGCUAAUGCAAAUUGGAGGAAGGAAGGGAUGACGUCAAAUCAUCAUGCCCCUUAUGUCUAGGGCUGCAAACGUGCUACAAUGGCCAAUACAAACAGUCGCCAGCUUGUAAAAGUGAGCAAAUCUGUAAAGUUGGUCUCAGUUCGGAUUGAGGGCUGCAAUUCGUCCUCAUGAAGUCGGAAUCACUAGUAAUCGCGAAUCAGCUAUGUCGCGGUGAAUACGUUCUCGGGUCUUGUACACACCGCCCGUCAAACUAUGAAAGCUGGUAAUAUUUAAAAACGUGUUGCUAACCAUUAGGAAGCGCAUGUCAAGGAUAGCACCGGUGAUUGGAGUUAAGUCGUAACAAGGUACCCCUACGAGAACGUGGGGGUGGAUCACCUCCUUUCUA

Entity 3 polymer

描述 description	tRNA-Asp (P-site)
分子量 formula_weight	24136.2 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polyribonucleotide
链编号 strand_id	7

GGUUCCAUGGUGUAGUGGAUAACAUAUCUCCCUGUCACGGAGGGGUUGCGGGUUCGAUUCCCGUUGGAACCGCCA

Entity 4 polymer

描述 description	tRNA-Lys (A-site)
分子量 formula_weight	24401.4 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polyribonucleotide
链编号 strand_id	8

GCAUCUUUAGCUCAGUUGGUAGAGCAAAUGACUCUUAAUCAUUGGGUCGGGGGUUCGAGCCCCUCAAGAUGCACCA

Entity 5 polymer

描述 description	30S ribosomal protein S2
分子量 formula_weight	33468.6 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	A

MSELITTPVETTAKAELVSLAKLGEMRTHVGMVKRYWNPKMGFFIEPERKHNNDHFVLELQRQSLQTAYNYVKEVAQNNGQILFVGTKNDYVKKLVNNIAKRVDVAFITQRWLGGTLTNFKTLSISINKLNKLVEKQAENAADLTKKENLMLSREIERLEKFFGGVKSLKRLPNLLIVDDPVYEKNAVAEANILRIPVVALCNTNTNPELVDFIIPANNHQPQSTCLLMNLLADAVAEAKAMPTMFAYKPDEEIQIEIPQKQEAPRQVVNRANSKQITSQRLNITRNPEVLTRE

Entity 6 polymer

描述 description	30S ribosomal protein S3
分子量 formula_weight	30657.2 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	B

MGQKVNSNGLRFGINKNWISRWTANSHAQTAKWLIEDEKIRNLFFVNYRNAQVSNVEIERTQATVDVFVYAAQPAFLIGSENKNIQKITKQIKQIIGRTTNLDLTINEIGSPMLSARIIARDLANAIEARVPLRTAMRQSLIKVLKAGANGIKVLVSGRLNGAEIARDKMYIEGNMPLSTLRADIDYALEKAQTTYGVIGVKVWINRGMIYTKGLNRTPAHILHPQKKQPNRQNQQPRHFNQGQVLSANKLTGSDVETSSIQALTKPNKEDKQ

Entity 7 polymer

描述 description	30S ribosomal protein S4
分子量 formula_weight	23817.6 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	C

MKYTGSIFKRSRRLGFSLLENNKEFSKGKKRKTIPGQHGNRFRSSTMSGYAQQLQEKQRMQYMYGITDKQFRRLFRLVLKQRGNLAVNLFRVLESRLDNIVYRMGFAPTRRSARQLVNHGHVLLNDRTVDTPSIILNPGDKVRLKAKTIKIPIVKAASESGVVSPFVETNNKTFEGTYVRFPERSELPAGINESYVVEWYKRLVK

Entity 8 polymer

描述 description	30S ribosomal protein S5
分子量 formula_weight	24138.0 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	D

MTDQNQKANQGNGLQTTNLQAHAQRKHNLRPSSEGIKKAVSKKEGGGHNRNNQNRRFQKPAFKSEFEERIVKLKRISKTTKGGRNMRFSVLVVVGNRKGKIGYGIAKALEVPNAIKKAIKAAHNSLHTIEIHKGSIYHEVIGRSGASRVLLKPAPQGTGIIAGGAIRAIIELAGYSDIYTKNLGRNTPINMIHATMDGILKQLSPRRVAILRNKNLNEL

Entity 9 polymer

描述 description	30S ribosomal protein S6
分子量 formula_weight	25430.5 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	E

MQYNIILLVDGSLSLEQANQVNEKQQQTLTNVEGLQTEYLGLKELAYPIKKQLSAHYYRWKFSGDNQSTKDFKRTANINKQVLRELIINLEREYGYLASINPKKQQLALQKRAKYDEIIARENNPENPDVPVTSGLASTQPRLSRTEKAQKPKEELWDVVQKMGNFDSVQANPYRPRFKRFNAEHVNQRQNQQNNNNNRFDRNRNRQHNRFKDKQ

Entity 10 polymer

描述 description	30S ribosomal protein S7
分子量 formula_weight	17897.0 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	F

MRKNRAPKRTVLPDPVFNNTLVTRIINVIMEDGKKGLAQRILYGAFDLIEQRTKEKPLTVFERAVGNVMPRLELRVRRIAGSNYQVPTEVPQDRKIALALRWIAMFARKRHEKTMLEKIANEIIDASNNTGAAIKKKDDTHKMAEANKAFAHMRW

Entity 11 polymer

描述 description	30S ribosomal protein S8
分子量 formula_weight	15903.1 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	G

MITTTKPIKAHFDPVADLLTKINNARKAKLMTVTTIASKLKIAILEILVKEGYLANFQVLENKSKTKRIVTFNLKYTQRRIPSINGVKQISKPGLRIYRPFEKLPLVLNGLGIAIISTSDGVMTDKVARLKKIGGEILAYVW

Entity 12 polymer

描述 description	30S ribosomal protein S9
分子量 formula_weight	15149.7 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	H

MEKQSYYGLGRRKSSSAKVYLTPTQDKGKITVNRRDPSEYFPNKLVIQDMEQPLDLTDLKKNFDINVVVKGGGFTGQAGAIRLGIVRALLQFNPELKKILKSKKLTTRDKRVKERKKFGLYGARRAPQFTKR

Entity 13 polymer

描述 description	30S ribosomal protein S10
分子量 formula_weight	12226.6 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	I

MNAANAVKYPELKIKLESYDSTLLDLTTKKIVEVVKGVDVKIKGPLPLPTKKEVITIIRSPHVDKASREQFEKNRHKRLMILVDVNQGAIDSLKRIKIPVGVTLRFSK

Entity 14 polymer

描述 description	30S ribosomal protein S11
分子量 formula_weight	12709.9 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	J

MAKKKKINVSSGIIHVSCSPNNTIVSASDPGGNVLCWASSGTMGFKGSRKKTPYSAGIAADKVAKTVKEMGMATVKLFVKGTGRGKDTAIRSFANAGLSITEINEKTPIPHNGCKPPKRPR

Entity 15 polymer

描述 description	30S ribosomal protein S12
分子量 formula_weight	15666.6 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	K

MATIAQLIRKPRKKKKVKSKSPALHYNLNLLNKKVTNVYSPLKRGVCTRVGTMTPKKPNSALRKYAKVRLTNGFEVLTYIPGEGHNLQEHSVTLLRGGRVKDLPGVRYHIVRGTLDTVGVEKRRQQRSAYGAKKPKAKS

Entity 16 polymer

描述 description	30S ribosomal protein S13
分子量 formula_weight	14209.6 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	L

MARILGIDIPNQKRIEIALTYIFGIGLSRSQAILKQANINPDKRVKDLTEEEFVAIRNVASAYKIEGDLRREIALNIKHLSEIGAWRGLRHRKNLPVRGQRTRTNARTRKGPRKTVANKKIESK

Entity 17 polymer

描述 description	30S ribosomal protein S14 type Z
分子量 formula_weight	6901.4 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	M

MAKKSLKVKQTRIPKFAVRAYTRCQRCGRARAVLSHFGVCRLCFRELAYAGAIPGVKKASW

Entity 18 polymer

描述 description	30S ribosomal protein S15
分子量 formula_weight	9921.7 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	N

MQIDKNGIIKSAQLHDKDVGSIQVQVSLLTSQIKQLTDHLLANKKDFISKRGLYAKVSKRKRLLKYLKHNDLEAYRNLVKTLNLRG

Entity 19 polymer

描述 description	30S ribosomal protein S16
分子量 formula_weight	10806.9 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	O

MVKIRLMRMGRVHYPTYRIVAVDSRVKRDGKYIALIGHLNPALKENKCKIDEAVALEWLNKGAKPTDTVRSLFSQTGLWKKFVESKKKPVAKSK

Entity 20 polymer

描述 description	30S ribosomal protein S17
分子量 formula_weight	9859.6 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	P

MKRNQRKVLIGIVKSTKNAKTATVQVESRFKHPLYHKSVVRHKKYQAHNEGEVLAKDGDKVQIVETRPLSATKRFRIAKIIERAK

Entity 21 polymer

描述 description	30S ribosomal protein S18
分子量 formula_weight	12411.5 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	Q

MMNNEHDNFQKEVETTTETTFNREEGKRMVRPLFKRSKKYCRFCAIGQLRIDLIDDLEALKRFLSPYAKINPRRITGNCQMHQRHVAKALKRARYLALVPFVKD

Entity 22 polymer

描述 description	30S ribosomal protein S19
分子量 formula_weight	10057.6 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	R

MSRSAKKGAFVDAHLLKKVIDMNKQEKKRPIKTWSRRSTIFPEFVGNTFAVHNGKTFINVYVTDDMVGHKLGEFSPTRNFKQHTANR

Entity 23 polymer

描述 description	30S ribosomal protein S20
分子量 formula_weight	9993.6 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	S

MANIKSNEKRLRQNIKRNLNNKGQKTKLKTNVKNFHKEINLDNLGNVYSQADRLARKGIISTNRARRLKSRNVAVLNKTQVTAVEGK

Entity 24 polymer

描述 description	30S ribosomal protein S21
分子量 formula_weight	7539.2 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	T

MPKIEVKNDDLELALKKFKRVSLEIRRLAQRHEYHLRKGMRLREKRKIAQKKRRKFRNMV

Entity 25 polymer

描述 description	mRNA
分子量 formula_weight	6698.0 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polyribonucleotide
链编号 strand_id	Y

CUGCUGAUAAGGUCUUCAAAA

Entity 26 polymer

描述 description	50S ribosomal protein L31
分子量 formula_weight	10980.7 kDa
来源方法 src_method	nat
拷贝数 entity_count	1

聚合体 Polymer

聚合体类型 type	polypeptide(L)
链编号 strand_id	x

MKKDFHFPSQSVSFKCASCSNSFTIESTLKQKEITIDICGKCHPFYIGELTKQTVHGRAEKLSGKFNAGKAFLENKTPKKAKGKTEEYTKHRSLNEL

Entity 27 non-polymer

描述 description	SPERMIDINE
分子量 formula_weight	145.2 kDa
来源方法 src_method	syn
拷贝数 entity_count	2

Entity 28 non-polymer

描述 description	1,4-DIAMINOBUTANE
分子量 formula_weight	88.2 kDa
来源方法 src_method	syn
拷贝数 entity_count	2

Entity 29 non-polymer

描述 description	PENTANE-1,5-DIAMINE
分子量 formula_weight	102.2 kDa
来源方法 src_method	syn
拷贝数 entity_count	1

Entity 30 non-polymer

描述 description	MAGNESIUM ION
分子量 formula_weight	24.3 kDa
来源方法 src_method	syn
拷贝数 entity_count	103

Entity 31 non-polymer

描述 description	ZINC ION
分子量 formula_weight	65.4 kDa
来源方法 src_method	syn
拷贝数 entity_count	2

Entity 32 water

描述 description	water
分子量 formula_weight	18.0 kDa
来源方法 src_method	nat
拷贝数 entity_count	2

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7. 引用文献 (1)

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晶胞边长 a length_a	1.000 Å
晶胞边长 b length_b	1.000 Å
晶胞边长 c length_c	1.000 Å
晶胞夹角 α angle_alpha	90.00 °
晶胞夹角 β angle_beta	90.00 °
晶胞夹角 γ angle_gamma	90.00 °
晶胞分子数 Z z_pdb	—

空间群 space_group	P 1
空间群编号 int_tables_number	1
晶系 crystal_system	—

分辨率 resolution	3.20 Å
分辨率测定方法 resolution_method	—
颗粒数 num_particles	30774

fit	/app/data/saxs_computation/p6/8p6p/8p6p.fit
pddf	/app/data/pr_computation/p6/8p6p/8p6p.pr.out
profile	/app/data/saxs_computation/p6/8p6p/8p6p.dat

Mycoplasma pneumoniae small ribosomal subunit in chloramphenicol-treated cells

SAXS 散射曲线 SAXS Profile

P(r) 距离分布 P(r) Distribution

1. 结构基本信息 1. Structure Basics

2. SAXS 参数 (CRYSOL 理论计算) 2. SAXS Parameters (CRYSOL)

3. P(r) 距离分布 (GNOM 反演) 3. P(r) Analysis (GNOM)

4. 晶体学与实验 4. Crystallography & Experiment

晶胞参数 Unit Cell

对称性 Symmetry

冷冻电镜 EM 3D

5. 实体与聚合体信息 (32)

Entity 1 polymer

聚合体 Polymer

Entity 2 polymer

聚合体 Polymer

Entity 3 polymer

聚合体 Polymer

Entity 4 polymer

聚合体 Polymer

Entity 5 polymer

聚合体 Polymer

Entity 6 polymer

聚合体 Polymer

Entity 7 polymer

聚合体 Polymer

Entity 8 polymer

聚合体 Polymer

Entity 9 polymer

聚合体 Polymer

Entity 10 polymer

聚合体 Polymer

Entity 11 polymer

聚合体 Polymer

Entity 12 polymer

聚合体 Polymer

Entity 13 polymer

聚合体 Polymer

Entity 14 polymer

聚合体 Polymer

Entity 15 polymer

聚合体 Polymer

Entity 16 polymer

聚合体 Polymer

Entity 17 polymer

聚合体 Polymer

Entity 18 polymer

聚合体 Polymer

Entity 19 polymer

聚合体 Polymer

Entity 20 polymer

聚合体 Polymer

Entity 21 polymer

聚合体 Polymer

Entity 22 polymer

聚合体 Polymer

Entity 23 polymer

聚合体 Polymer

Entity 24 polymer

聚合体 Polymer

Entity 25 polymer

聚合体 Polymer

Entity 26 polymer

聚合体 Polymer

Entity 27 non-polymer

Entity 28 non-polymer

Entity 29 non-polymer

Entity 30 non-polymer

Entity 31 non-polymer

Entity 32 water

7. 引用文献 (1)

8. 文件与曲线 (10)

Files (7)

Curves (3)