SAXSdb — 8qbx

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1. Protein Identity and Related Structures Protein Identity & Related Structures

Penton protein

Human adenovirus sp.

State in the Current Structure

Assembly	Physical composition	Protein state	Molecular copy count	Associated components	Data consistency
1	Protein homooligomer	Homooligomer	Protein 60	No other associated polymer	Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence

UniProt name	Q2Y0H9_ADE03
Isoform	—
PDB entities	1
Chains and sequence ranges	Author chain A； PDBConstruct 1–555； UniProt 1–544 Author chain AA； PDBConstruct 1–555； UniProt 1–544 Author chain AB； PDBConstruct 1–555； UniProt 1–544 Author chain B； PDBConstruct 1–555； UniProt 1–544 Author chain BA； PDBConstruct 1–555； UniProt 1–544 Author chain BB； PDBConstruct 1–555； UniProt 1–544 Author chain C； PDBConstruct 1–555； UniProt 1–544 Author chain CA； PDBConstruct 1–555； UniProt 1–544 Author chain CB； PDBConstruct 1–555； UniProt 1–544 Author chain D； PDBConstruct 1–555； UniProt 1–544 Author chain DA； PDBConstruct 1–555； UniProt 1–544 Author chain DB； PDBConstruct 1–555； UniProt 1–544 Author chain E； PDBConstruct 1–555； UniProt 1–544 Author chain EA； PDBConstruct 1–555； UniProt 1–544 Author chain EB； PDBConstruct 1–555； UniProt 1–544 Author chain F； PDBConstruct 1–555； UniProt 1–544 Author chain FA； PDBConstruct 1–555； UniProt 1–544 Author chain FB； PDBConstruct 1–555； UniProt 1–544 Author chain G； PDBConstruct 1–555； UniProt 1–544 Author chain GA； PDBConstruct 1–555； UniProt 1–544 Author chain GB； PDBConstruct 1–555； UniProt 1–544 Author chain H； PDBConstruct 1–555； UniProt 1–544 Author chain HA； PDBConstruct 1–555； UniProt 1–544 Author chain HB； PDBConstruct 1–555； UniProt 1–544 Author chain I； PDBConstruct 1–555； UniProt 1–544 Author chain IA； PDBConstruct 1–555； UniProt 1–544 Author chain IB； PDBConstruct 1–555； UniProt 1–544 Author chain J； PDBConstruct 1–555； UniProt 1–544 Author chain JA； PDBConstruct 1–555； UniProt 1–544 Author chain K； PDBConstruct 1–555； UniProt 1–544 Author chain KA； PDBConstruct 1–555； UniProt 1–544 Author chain L； PDBConstruct 1–555； UniProt 1–544 Author chain LA； PDBConstruct 1–555； UniProt 1–544 Author chain M； PDBConstruct 1–555； UniProt 1–544 Author chain MA； PDBConstruct 1–555； UniProt 1–544 Author chain N； PDBConstruct 1–555； UniProt 1–544 Author chain NA； PDBConstruct 1–555； UniProt 1–544 Author chain O； PDBConstruct 1–555； UniProt 1–544 Author chain OA； PDBConstruct 1–555； UniProt 1–544 Author chain P； PDBConstruct 1–555； UniProt 1–544 Author chain PA； PDBConstruct 1–555； UniProt 1–544 Author chain Q； PDBConstruct 1–555； UniProt 1–544 Author chain QA； PDBConstruct 1–555； UniProt 1–544 Author chain R； PDBConstruct 1–555； UniProt 1–544 Author chain RA； PDBConstruct 1–555； UniProt 1–544 Author chain S； PDBConstruct 1–555； UniProt 1–544 Author chain SA； PDBConstruct 1–555； UniProt 1–544 Author chain T； PDBConstruct 1–555； UniProt 1–544 Author chain TA； PDBConstruct 1–555； UniProt 1–544 Author chain UA； PDBConstruct 1–555； UniProt 1–544 Author chain V； PDBConstruct 1–555； UniProt 1–544 Author chain VA； PDBConstruct 1–555； UniProt 1–544 Author chain W； PDBConstruct 1–555； UniProt 1–544 Author chain WA； PDBConstruct 1–555； UniProt 1–544 Author chain X； PDBConstruct 1–555； UniProt 1–544 Author chain XA； PDBConstruct 1–555； UniProt 1–544 Author chain Y； PDBConstruct 1–555； UniProt 1–544 Author chain YA； PDBConstruct 1–555； UniProt 1–544 Author chain Z； PDBConstruct 1–555； UniProt 1–544 Author chain ZA； PDBConstruct 1–555； UniProt 1–544

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id	8qbx
Deposition date deposition_date	2023-08-25
Structure title title	Chimeric Adenovirus-derived dodecamer
Keywords keywords	Adenovirus, capsid protein, virus-like particle, VIRUS LIKE PARTICLE; VIRUS LIKE PARTICLE
Experimental Method method	ELECTRON MICROSCOPY

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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

8qbx__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

8qbx__assembly_1__model_1 | I(q)

100 plotted points; both axes use logarithmic scales.

8qbx__assembly_1__model_1 | P(r) · Pending

P(r) will be calculated and displayed separately for the same assembly/model.

Rg（Guinier）	97.40 Å
Rg (electron density)	96.63 Å
Total Rg	96.39 Å
Atom count	183706
Residues	24180
Excluded volume	3252100 Å³
Maximum q	0.500 Å⁻¹

Assembly	Model	Structure unit	Oligomeric description	Status	CRYSOL	Actions
1	1	`8qbx__assembly_1__model_1`	60-meric （60）	Success	4.1.3-1-20251215 (887e7ef)	View Download

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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (1)

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Unit-cell length a length_a	1.000 Å
Unit-cell length b length_b	1.000 Å
Unit-cell length c length_c	1.000 Å
Unit-cell angle α angle_alpha	90.00 °
Unit-cell angle β angle_beta	90.00 °
Unit-cell angle γ angle_gamma	90.00 °
Molecules per unit cell Z z_pdb	—

Space group space_group	P 1
Space-group number int_tables_number	1
Crystal system crystal_system	—

Resolution resolution	2.20 Å
Resolution测定Method resolution_method	—
颗粒数 num_particles	566795

Description description	Penton protein
Molecular weight formula_weight	63195.8 kDa
Source method src_method	man
Copy count entity_count	60

Polymer type type	polypeptide(L)
Chain IDs strand_id	;F,C,A,B,D,E,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,V,W,X,Y,Z,AA,BA,CA,DA,EA,FA,GA,HA,IA,JA,KA,LA,MA,NA,OA,PA,QA,RA,SA,TA,UA,VA,WA,XA,YA,ZA,AB,BB,CB,DB,EB,FB,GB,HB,IB ;
Atom count atom_count	183706

Chimeric Adenovirus-derived dodecamer

1. Protein Identity and Related Structures Protein Identity & Related Structures

Penton protein

State in the Current Structure

Other States of the Same Protein in the Database

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

8qbx__assembly_1__model_1

8qbx__assembly_1__model_1 | I(q)

8qbx__assembly_1__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

冷冻电镜 EM 3D

5. Entities and Polymers Entities & Polymers (1)

Entity 1 Entity 1 polymer

Polymer Polymer

Source Source

7. Citations (1)

Source organism organism	Human adenovirus sp.
NCBI taxonomy ID ncbi_taxonomy_id	1907210
Host organism host_organism	Trichoplusia ni

Chimeric Adenovirus-derived dodecamer

1. Protein Identity and Related Structures Protein Identity & Related Structures

Penton protein

State in the Current Structure

Other States of the Same Protein in the Database

Monomer

Homodimer

Homotetramer

Other homooligomers

Heteromeric or nucleic-acid complex

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

8qbx__assembly_1__model_1

8qbx__assembly_1__model_1 | I(q)

8qbx__assembly_1__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

冷冻电镜 EM 3D

5. Entities and Polymers Entities & Polymers (1)

Entity 1 Entity 1 polymer

Polymer Polymer

Source Source

7. Citations (1)