8sj3

Beta-lactamase CTX-M-14 E166Y/N170G

Method: X-RAY DIFFRACTION Dmax: 87.2 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Beta-lactamase CTX-M-14

Escherichia coli

UniProt H6UQI0

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain A; UniProt 22–284 Not recorded No other associated polymer X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 5;298 K;0.2 M ammonium chloride, 0.1 M sodium acetate, 20% w/v PEG 6,000 Resolution 1.50 Å R-free 0.198
2 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain B; UniProt 22–284 Not recorded No other associated polymer X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 5;298 K;0.2 M ammonium chloride, 0.1 M sodium acetate, 20% w/v PEG 6,000 Resolution 1.50 Å R-free 0.198

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

16 other PDB entries and 24 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name H6UQI0_ECOLX
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–263; UniProt 22–284 Author chain B; PDBConstruct 1–263; UniProt 22–284

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 8sj3

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 8sj3
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2. Structure Basics 2. Structure Basics

Entry ID entry_id8sj3
Deposition date deposition_date2023-04-17
Structure title titleBeta-lactamase CTX-M-14 E166Y/N170G
Keywords keywordsbeta-lactamase, enzyme, serine protease, antimicrobial resistance, HYDROLASE; HYDROLASE
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier27.70
Radius of gyration Rg (electron density) rg_electron26.92
Forward intensity I(0) i052250300.00
Molecular weight molecular_weight55372.0 kDa
Excluded volume excluded_volume68996 ų
Envelope volume envelope_volume81756 ų
Hydration-shell volume shell_volume25821 ų
Envelope diameter envelope_diameter91.5
Shell Rg shell_rg33.54
Envelope Rg envelope_rg26.89
Shape Rg shape_rg26.93
Total Rg total_rg27.56
Total atoms total_atoms3891
Residues n_residues522
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax87.2
Rg (real space) rg_real27.80
Rg uncertainty (real space) rg_real_error0.67
I(0) (real space) i0_real5.2250e+07
I(0) uncertainty (real space) i0_real_error7.8280e+05
Rg (reciprocal space) rg_reciprocal27.77
I(0) (reciprocal space) i0_reciprocal52250000.0000
Solution quality estimate total_estimate0.8893
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary26.0
Skewness Skewness skewness0.345
Kurtosis Kurtosis kurtosis-0.637
Angular range angular_range— – 0.2850 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha14110000.0000
Real-space data points n_real_points58
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.904; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.933; Smooth: 0.910

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (2)

8. Citations (1)

9. Files and Curves (10)