8tuc

Unphosphorylated CaMKK2 in complex with CC-8977

Method: X-RAY DIFFRACTION Dmax: 68.4 Å Quality: REASONABLE

1. Protein Identity and Related Structures Protein Identity & Related Structures

Calcium/calmodulin-dependent protein kinase kinase 2

Homo sapiens

UniProt Q96RR4

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain A; UniProt 161–449 Fragment:residues 161-449 O7I (4M)-2-cyclopentyl-4-(7-ethoxyquinazolin-4-yl)benzoic acid × 1 SO4 SULFATE ION × 4 EDO 1,2-ETHANEDIOL × 2 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;pH 6.5;293 K;2.0 M (NH4)2S04, 2 M NaCl, 0.1 NaCacodylate Resolution 1.50 Å R-free 0.207

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

20 other PDB entries and 25 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name KKCC2_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 3–291; UniProt 161–449

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 8tuc

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 8tuc
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2. Structure Basics 2. Structure Basics

Entry ID entry_id8tuc
Deposition date deposition_date2023-08-16
Structure title titleUnphosphorylated CaMKK2 in complex with CC-8977
Keywords keywordsCalcium/Calmodulin Dependent Protein Kinase Kinase 2, CAMKK2, Inhibitor, TRANSFERASE, TRANSFERASE-INHIBITOR complex; TRANSFERASE/INHIBITOR
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier20.99
Radius of gyration Rg (electron density) rg_electron19.59
Forward intensity I(0) i017988300.00
Molecular weight molecular_weight32577.0 kDa
Excluded volume excluded_volume41031 ų
Envelope volume envelope_volume48753 ų
Hydration-shell volume shell_volume20685 ų
Envelope diameter envelope_diameter67.1
Shell Rg shell_rg26.14
Envelope Rg envelope_rg19.93
Shape Rg shape_rg19.57
Total Rg total_rg20.59
Total atoms total_atoms2286
Residues n_residues278
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax68.4
Rg (real space) rg_real20.91
Rg uncertainty (real space) rg_real_error0.43
I(0) (real space) i0_real1.7990e+07
I(0) uncertainty (real space) i0_real_error2.3160e+05
Rg (reciprocal space) rg_reciprocal20.93
I(0) (reciprocal space) i0_reciprocal17990000.0000
Solution quality estimate total_estimate0.6611
Solution quality rating solution_quality REASONABLE a REASONABLE solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary24.8
Skewness Skewness skewness0.243
Kurtosis Kurtosis kurtosis-0.422
Angular range angular_range— – 0.3800 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha3959000.0000
Real-space data points n_real_points70
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.865; Stabil: 1.000; Sysdev: 0.001; Positv: 1.000; Valcen: 1.000; Smooth: 0.994

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (5)

8. Citations (1)

9. Files and Curves (10)