← Back to search
8u5m

Structure of Sts-1 HP domain with rebamipide

Method: X-RAY DIFFRACTION
▼

1. Protein Identity and Related Structures Protein Identity & Related Structures

Ubiquitin-associated and SH3 domain-containing protein B

Homo sapiens

UniProt Q8TF42

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein homooligomer Homooligomer Protein 2 Rebamipide × 1 water × 2 Consistent with protein count
2 Protein homooligomer Homooligomer Protein 2 water × 2 Consistent with protein count
3 Protein homooligomer Homooligomer Protein 2 Rebamipide × 2 water × 2 Consistent with protein count

Other States of the Same Protein in the Database

Monomer
2e5k

1 assemblies

Homodimer
5vr6 5w5g 5w5g 8u5m 8u5m 8u5m 8u7e 8u7e 8u7e

9 assemblies

Homotetramer

None

Other homooligomers

None

Heteromeric or nucleic-acid complex

None

View Construct and Data Evidence
UniProt name UBS3B_HUMAN
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A； PDBConstruct 18–287； UniProt 380–649 Author chain B； PDBConstruct 18–287； UniProt 380–649 Author chain C； PDBConstruct 18–287； UniProt 380–649 Author chain D； PDBConstruct 18–287； UniProt 380–649 Author chain E； PDBConstruct 18–287； UniProt 380–649 Author chain F； PDBConstruct 18–287； UniProt 380–649

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

▼

2. Structure Basics 2. Structure Basics

Entry ID entry_id8u5m
Deposition date deposition_date2023-09-12
Structure title titleStructure of Sts-1 HP domain with rebamipide
Keywords keywordsSts-1, histidine phosphatase, inhibitor, UBASH3B, TULA-2, HYDROLASE-HYDROLASE INHIBITOR complex; HYDROLASE/HYDROLASE INHIBITOR
Experimental Method methodX-RAY DIFFRACTION
▼

3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

8u5m__assembly_3__model_1

Assembly 3 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

8u5m__assembly_3__model_1 | I(q)

10-2 10-1 105 106 107 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

8u5m__assembly_3__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）26.25 Å
Rg (electron density)25.41 Å
Total Rg26.15 Å
Atom count3935
Residues514
Excluded volume69904 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 8u5m__assembly_1__model_1 dimeric （2） Success 4.1.3-1-20251215 (887e7ef) View Download
2 1 8u5m__assembly_2__model_1 dimeric （2） Success 4.1.3-1-20251215 (887e7ef) View Download
3 1 8u5m__assembly_3__model_1 dimeric （2） Success 4.1.3-1-20251215 (887e7ef) View Download
▶

4. Crystallography and Experiment 4. Crystallography & Experiment

▶

5. Entities and Polymers Entities & Polymers (3)

▶

7. Citations (1)