8yue

Crystal structure of the kinesin-14 motor protein from Drosophila melanogaster

Method: X-RAY DIFFRACTION Dmax: 108.1 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Protein claret segregational

Drosophila melanogaster

UniProt P20480

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein homooligomer Homooligomer Protein × 2 PDB declaration: dimeric(2) Consistent with protein copy count Chain A; UniProt 293–680 Chain B; UniProt 293–680 Mutation:Y485K ADP ADENOSINE-5'-DIPHOSPHATE × 2 PO4 PHOSPHATE ION × 4 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, HANGING DROP;296 K;0.5M NaCl, 50mM NaPi, pH6.8, 7mM DTT, 13% PEG 8000 Resolution 3.15 Å R-free 0.295

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

15 other PDB entries and 18 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name NCD_DROME
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 3–390; UniProt 293–680 Author chain B; PDBConstruct 3–390; UniProt 293–680

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 8yue

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 8yue
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2. Structure Basics 2. Structure Basics

Entry ID entry_id8yue
Deposition date deposition_date2024-03-27
Structure title titleCrystal structure of the kinesin-14 motor protein from Drosophila melanogaster
Keywords keywordsKinesin-related, Microtubule motor protein, Spindle motor, MOTOR PROTEIN; MOTOR PROTEIN
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier33.03
Radius of gyration Rg (electron density) rg_electron32.36
Forward intensity I(0) i0120840000.00
Molecular weight molecular_weight82907.0 kDa
Excluded volume excluded_volume101960 ų
Envelope volume envelope_volume132860 ų
Hydration-shell volume shell_volume35101 ų
Envelope diameter envelope_diameter116.2
Shell Rg shell_rg38.11
Envelope Rg envelope_rg32.24
Shape Rg shape_rg32.34
Total Rg total_rg32.90
Total atoms total_atoms5793
Residues n_residues721
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax108.1
Rg (real space) rg_real33.03
Rg uncertainty (real space) rg_real_error0.87
I(0) (real space) i0_real1.2080e+08
I(0) uncertainty (real space) i0_real_error1.8370e+06
Rg (reciprocal space) rg_reciprocal33.04
I(0) (reciprocal space) i0_reciprocal120800000.0000
Solution quality estimate total_estimate0.8967
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary33.8
Skewness Skewness skewness0.254
Kurtosis Kurtosis kurtosis-0.581
Angular range angular_range— – 0.2400 −1
Current regularization parameter α current_alpha0.0000
Highest regularization parameter α highest_alpha13820000.0000
Real-space data points n_real_points49
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.920; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.963; Smooth: 0.929

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (3)

8. Citations (1)

9. Files and Curves (10)