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9b7w

Fab3-6 in complex with the capsid of Adeno-associated virus type 9

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Capsid protein VP1

Adeno-associated virus

UniProt Q6JC40

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 8 Fab3-6 heavy chain × 1 Fab3-6 light chain × 1 Consistent with protein count

Other States of the Same Protein in the Database

Monomer
3ux1 3ux1 7wjw 7wjw 7wqo 7wqo

6 assemblies

Homodimer

None

Homotetramer

None

Other homooligomers
3ux1 3ux1 3ux1 3ux1 7mt0 7mtg 7mtp 7mtw 7mtz 7mua 7rk8 7ud4

22 assemblies; showing the first 12

Heteromeric or nucleic-acid complex
7wjx 7wjx 7wjx 7wjx 7wjx 7wqp 7wqp 7wqp 7wqp 7wqp 8jif 9b7r

18 assemblies; showing the first 12

View Construct and Data Evidence
UniProt name Q6JC40_9VIRU
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A； PDBConstruct 1–736； UniProt 1–736 Author chain B； PDBConstruct 1–736； UniProt 1–736 Author chain C； PDBConstruct 1–736； UniProt 1–736 Author chain D； PDBConstruct 1–736； UniProt 1–736 Author chain E； PDBConstruct 1–736； UniProt 1–736 Author chain F； PDBConstruct 1–736； UniProt 1–736

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id9b7w
Deposition date deposition_date2024-03-27
Structure title titleFab3-6 in complex with the capsid of Adeno-associated virus type 9
Keywords keywordsAdeno-associated virus, AAV, capsid, Fab-complex, antibody, NAb, VIRAL PROTEIN-IMMUNE SYSTEM complex; VIRAL PROTEIN/IMMUNE SYSTEM
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

9b7w__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

9b7w__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

9b7w__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）40.25 Å
Rg (electron density)39.48 Å
Total Rg40.01 Å
Atom count16963
Residues2151
Excluded volume297030 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 9b7w__assembly_1__model_1 octameric （8） Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (3)

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7. Citations (1)