9dof

Octahedral small virus-like particles of dengue virus type 2 (local reconstruction)

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

glycoprotein E

dengue virus type 2

UniProt G3GAJ4

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 6 Protein prM × 3 (P14340) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name G3GAJ4_9FLAV
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–495; UniProt 1–495 Author chain B; PDBConstruct 1–495; UniProt 1–495 Author chain C; PDBConstruct 1–495; UniProt 1–495

Protein prM

dengue virus type 2

UniProt P14340

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 6 glycoprotein E × 3 (G3GAJ4) Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name POLG_DEN2N
Isoform —
PDB entities 2
Chains and sequence ranges Author chain D; PDBConstruct 1–166; UniProt 115–280 Author chain E; PDBConstruct 1–166; UniProt 115–280 Author chain F; PDBConstruct 1–166; UniProt 115–280

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id9dof
Deposition date deposition_date2024-09-19
Structure title titleOctahedral small virus-like particles of dengue virus type 2 (local reconstruction)
Keywords keywordsdengue virus type 2, virus, flavivirus, virus-like particle, prM-E protein, fusion protein, cryoEM, VIRUS LIKE PARTICLE; VIRUS LIKE PARTICLE
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

9dof__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

9dof__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

9dof__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)53.73 Å
Rg (electron density)53.69 Å
Total Rg53.84 Å
Atom count30759
Residues1983
Excluded volume275060 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 9dof__assembly_1__model_1 hexameric (6) Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (2)

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7. Citations (1)