← Back to search
9eac

Seneca valley virus Empty rotated particle at acidic condition (ER-particle[C])

Method: ELECTRON MICROSCOPY
▼

1. Protein Identity and Related Structures Protein Identity & Related Structures

Capsid protein VP1

OrganismNot specified

UniProt Q155Z9

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein homooligomer Homooligomer Protein 180 CALCIUM ION × 60 Consistent with protein count

Other States of the Same Protein in the Database

Monomer

None

Homodimer

None

Homotetramer
3cji 3cji

2 assemblies

Other homooligomers
3cji 3cji 3cji 3cji 9eaa 9eab 9eac 9ead

8 assemblies

Heteromeric or nucleic-acid complex

None

View Construct and Data Evidence
UniProt name POLG_SVV1
Isoform —
PDB entities 1, 2, 3
Chains and sequence ranges Author chain A； PDBConstruct 1–230； UniProt 702–931 Author chain B； PDBConstruct 1–238； UniProt 435–672 Author chain C； PDBConstruct 1–217； UniProt 213–429

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

▼

2. Structure Basics 2. Structure Basics

Entry ID entry_id9eac
Deposition date deposition_date2024-11-10
Structure title titleSeneca valley virus Empty rotated particle at acidic condition (ER-particle[C])
Keywords keywords;SVV, Capsid, Physiological condition, Virus, Non-enterovirus, A-particle, Altered particle, genome release, capsid uncoating, Seneca Valley virus, Senecavirus, Oncolytic virus ;; VIRUS
Experimental Method methodELECTRON MICROSCOPY
▼

3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

9eac__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

9eac__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 1010 1011 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

9eac__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）0.00 Å
Rg (electron density)148.90 Å
Total Rg149.00 Å
Atom count517500
Residues40740
Excluded volume4876900 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 9eac__assembly_1__model_1 180-meric （180） Success 4.1.3-1-20251215 (887e7ef) View Download
▶

4. Crystallography and Experiment 4. Crystallography & Experiment

▶

5. Entities and Polymers Entities & Polymers (4)

▶

7. Citations (1)