9fpu

Crystal structure of carbonic anhydrase II with N-butyl-4-chloro-3-sulfamoyl-benzamide

Method: X-RAY DIFFRACTION Dmax: 57.6 Å Quality: REASONABLE

1. Protein Identity and Related Structures Protein Identity & Related Structures

Carbonic anhydrase 2

Homo sapiens

UniProt P00918

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein monomer Monomer Protein × 1 PDB declaration: monomeric(1) Consistent with protein copy count Chain A; UniProt 1–260 Not recorded ZN ZINC ION × 1 A1IEP ~{N}-butyl-4-chloranyl-3-sulfamoyl-benzamide × 1 NA SODIUM ION × 1 BCN BICINE × 1 DMS DIMETHYL SULFOXIDE × 1 X-RAY DIFFRACTION X-ray crystallization conditions:VAPOR DIFFUSION, SITTING DROP;291 K;0.1M sodium bicine (pH 9) and 2M sodium malonate (pH 7) Resolution 1.12 Å R-free 0.174

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

1239 other PDB entries and 1272 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name CAH2_HUMAN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–260; UniProt 1–260

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 9fpu

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 9fpu
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2. Structure Basics 2. Structure Basics

Entry ID entry_id9fpu
Deposition date deposition_date2024-06-13
Structure title titleCrystal structure of carbonic anhydrase II with N-butyl-4-chloro-3-sulfamoyl-benzamide
Keywords keywordsDRUG DESIGN, CARBONIC ANHYDRASE, BENZENESULFONAMIDE, LYASE-LYASE INHIBITOR COMPLEX, LYASE; LYASE
Experimental Method methodX-RAY DIFFRACTION

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier18.27
Radius of gyration Rg (electron density) rg_electron17.25
Forward intensity I(0) i027754300.00
Molecular weight molecular_weight27367.0 kDa
Excluded volume excluded_volume26610 ų
Envelope volume envelope_volume40768 ų
Hydration-shell volume shell_volume19119 ų
Envelope diameter envelope_diameter59.1
Shell Rg shell_rg24.08
Envelope Rg envelope_rg17.65
Shape Rg shape_rg17.22
Total Rg total_rg18.02
Total atoms total_atoms2077
Residues n_residues258
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax57.6
Rg (real space) rg_real18.14
Rg uncertainty (real space) rg_real_error0.22
I(0) (real space) i0_real2.7750e+07
I(0) uncertainty (real space) i0_real_error3.2580e+05
Rg (reciprocal space) rg_reciprocal18.16
I(0) (reciprocal space) i0_reciprocal27750000.0000
Solution quality estimate total_estimate0.7367
Solution quality rating solution_quality REASONABLE a REASONABLE solution
P(r) peaks n_peaks2
Primary peak position r_peak_primary23.4
Skewness Skewness skewness0.097
Kurtosis Kurtosis kurtosis-0.458
Angular range angular_range— – 0.4350 −1
Current regularization parameter α current_alpha0.0001
Highest regularization parameter α highest_alpha4821000.0000
Real-space data points n_real_points75
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.872; Stabil: 1.000; Sysdev: 0.330; Positv: 1.000; Valcen: 0.983; Smooth: 0.984

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (7)

8. Citations (1)

9. Files and Curves (10)