9h2b

AcMNPV basal cap - C14 anchor complex only

Method: ELECTRON MICROSCOPY
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Occlusion-derived virus envelope protein E27

OrganismNot specified

UniProt P41702

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 196 Protein C42 × 28 (P25695) Uncharacterized 38.0 kDa protein in P143-LEF5 intergenic region × 14 (P24745) Protein AC142 × 14 (P41700) Major capsid protein × 56 (P17499) Capsid-associated protein VP80 × 42 (Q00733) Protein AC109 × 14 (P41662) ZINC ION × 56 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 14 Protein C42 × 2 (P25695) Uncharacterized 38.0 kDa protein in P143-LEF5 intergenic region × 1 (P24745) Protein AC142 × 1 (P41700) Major capsid protein × 4 (P17499) Capsid-associated protein VP80 × 3 (Q00733) Protein AC109 × 1 (P41662) ZINC ION × 4 Consistent with protein count
3 Protein heterocomplex Heteromer Protein 14 Protein C42 × 2 (P25695) Uncharacterized 38.0 kDa protein in P143-LEF5 intergenic region × 1 (P24745) Protein AC142 × 1 (P41700) Major capsid protein × 4 (P17499) Capsid-associated protein VP80 × 3 (Q00733) Protein AC109 × 1 (P41662) ZINC ION × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name E27_NPVAC
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–290; UniProt 1–290 Author chain B; PDBConstruct 1–290; UniProt 1–290

Protein C42

OrganismNot specified

UniProt P25695

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 196 Occlusion-derived virus envelope protein E27 × 28 (P41702) Uncharacterized 38.0 kDa protein in P143-LEF5 intergenic region × 14 (P24745) Protein AC142 × 14 (P41700) Major capsid protein × 56 (P17499) Capsid-associated protein VP80 × 42 (Q00733) Protein AC109 × 14 (P41662) ZINC ION × 56 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 14 Occlusion-derived virus envelope protein E27 × 2 (P41702) Uncharacterized 38.0 kDa protein in P143-LEF5 intergenic region × 1 (P24745) Protein AC142 × 1 (P41700) Major capsid protein × 4 (P17499) Capsid-associated protein VP80 × 3 (Q00733) Protein AC109 × 1 (P41662) ZINC ION × 4 Consistent with protein count
3 Protein heterocomplex Heteromer Protein 14 Occlusion-derived virus envelope protein E27 × 2 (P41702) Uncharacterized 38.0 kDa protein in P143-LEF5 intergenic region × 1 (P24745) Protein AC142 × 1 (P41700) Major capsid protein × 4 (P17499) Capsid-associated protein VP80 × 3 (Q00733) Protein AC109 × 1 (P41662) ZINC ION × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name C42_NPVAC
Isoform —
PDB entities 2
Chains and sequence ranges Author chain C; PDBConstruct 1–361; UniProt 1–361 Author chain D; PDBConstruct 1–361; UniProt 1–361

Uncharacterized 38.0 kDa protein in P143-LEF5 intergenic region

OrganismNot specified

UniProt P24745

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 196 Occlusion-derived virus envelope protein E27 × 28 (P41702) Protein C42 × 28 (P25695) Protein AC142 × 14 (P41700) Major capsid protein × 56 (P17499) Capsid-associated protein VP80 × 42 (Q00733) Protein AC109 × 14 (P41662) ZINC ION × 56 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 14 Occlusion-derived virus envelope protein E27 × 2 (P41702) Protein C42 × 2 (P25695) Protein AC142 × 1 (P41700) Major capsid protein × 4 (P17499) Capsid-associated protein VP80 × 3 (Q00733) Protein AC109 × 1 (P41662) ZINC ION × 4 Consistent with protein count
3 Protein heterocomplex Heteromer Protein 14 Occlusion-derived virus envelope protein E27 × 2 (P41702) Protein C42 × 2 (P25695) Protein AC142 × 1 (P41700) Major capsid protein × 4 (P17499) Capsid-associated protein VP80 × 3 (Q00733) Protein AC109 × 1 (P41662) ZINC ION × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name 38K_NPVAC
Isoform —
PDB entities 3
Chains and sequence ranges Author chain E; PDBConstruct 1–320; UniProt 1–320

Protein AC142

OrganismNot specified

UniProt P41700

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 196 Occlusion-derived virus envelope protein E27 × 28 (P41702) Protein C42 × 28 (P25695) Uncharacterized 38.0 kDa protein in P143-LEF5 intergenic region × 14 (P24745) Major capsid protein × 56 (P17499) Capsid-associated protein VP80 × 42 (Q00733) Protein AC109 × 14 (P41662) ZINC ION × 56 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 14 Occlusion-derived virus envelope protein E27 × 2 (P41702) Protein C42 × 2 (P25695) Uncharacterized 38.0 kDa protein in P143-LEF5 intergenic region × 1 (P24745) Major capsid protein × 4 (P17499) Capsid-associated protein VP80 × 3 (Q00733) Protein AC109 × 1 (P41662) ZINC ION × 4 Consistent with protein count
3 Protein heterocomplex Heteromer Protein 14 Occlusion-derived virus envelope protein E27 × 2 (P41702) Protein C42 × 2 (P25695) Uncharacterized 38.0 kDa protein in P143-LEF5 intergenic region × 1 (P24745) Major capsid protein × 4 (P17499) Capsid-associated protein VP80 × 3 (Q00733) Protein AC109 × 1 (P41662) ZINC ION × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name AC142_NPVAC
Isoform —
PDB entities 4
Chains and sequence ranges Author chain F; PDBConstruct 1–477; UniProt 1–477

Major capsid protein

OrganismNot specified

UniProt P17499

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 196 Occlusion-derived virus envelope protein E27 × 28 (P41702) Protein C42 × 28 (P25695) Uncharacterized 38.0 kDa protein in P143-LEF5 intergenic region × 14 (P24745) Protein AC142 × 14 (P41700) Capsid-associated protein VP80 × 42 (Q00733) Protein AC109 × 14 (P41662) ZINC ION × 56 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 14 Occlusion-derived virus envelope protein E27 × 2 (P41702) Protein C42 × 2 (P25695) Uncharacterized 38.0 kDa protein in P143-LEF5 intergenic region × 1 (P24745) Protein AC142 × 1 (P41700) Capsid-associated protein VP80 × 3 (Q00733) Protein AC109 × 1 (P41662) ZINC ION × 4 Consistent with protein count
3 Protein heterocomplex Heteromer Protein 14 Occlusion-derived virus envelope protein E27 × 2 (P41702) Protein C42 × 2 (P25695) Uncharacterized 38.0 kDa protein in P143-LEF5 intergenic region × 1 (P24745) Protein AC142 × 1 (P41700) Capsid-associated protein VP80 × 3 (Q00733) Protein AC109 × 1 (P41662) ZINC ION × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name MCP_NPVAC
Isoform —
PDB entities 5
Chains and sequence ranges Author chain G; PDBConstruct 1–347; UniProt 1–347 Author chain H; PDBConstruct 1–347; UniProt 1–347 Author chain M; PDBConstruct 1–347; UniProt 1–347 Author chain N; PDBConstruct 1–347; UniProt 1–347

Capsid-associated protein VP80

OrganismNot specified

UniProt Q00733

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 196 Occlusion-derived virus envelope protein E27 × 28 (P41702) Protein C42 × 28 (P25695) Uncharacterized 38.0 kDa protein in P143-LEF5 intergenic region × 14 (P24745) Protein AC142 × 14 (P41700) Major capsid protein × 56 (P17499) Protein AC109 × 14 (P41662) ZINC ION × 56 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 14 Occlusion-derived virus envelope protein E27 × 2 (P41702) Protein C42 × 2 (P25695) Uncharacterized 38.0 kDa protein in P143-LEF5 intergenic region × 1 (P24745) Protein AC142 × 1 (P41700) Major capsid protein × 4 (P17499) Protein AC109 × 1 (P41662) ZINC ION × 4 Consistent with protein count
3 Protein heterocomplex Heteromer Protein 14 Occlusion-derived virus envelope protein E27 × 2 (P41702) Protein C42 × 2 (P25695) Uncharacterized 38.0 kDa protein in P143-LEF5 intergenic region × 1 (P24745) Protein AC142 × 1 (P41700) Major capsid protein × 4 (P17499) Protein AC109 × 1 (P41662) ZINC ION × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name VP80_NPVAC
Isoform —
PDB entities 6
Chains and sequence ranges Author chain I; PDBConstruct 1–691; UniProt 1–691 Author chain J; PDBConstruct 1–691; UniProt 1–691 Author chain K; PDBConstruct 1–691; UniProt 1–691

Protein AC109

OrganismNot specified

UniProt P41662

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 196 Occlusion-derived virus envelope protein E27 × 28 (P41702) Protein C42 × 28 (P25695) Uncharacterized 38.0 kDa protein in P143-LEF5 intergenic region × 14 (P24745) Protein AC142 × 14 (P41700) Major capsid protein × 56 (P17499) Capsid-associated protein VP80 × 42 (Q00733) ZINC ION × 56 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 14 Occlusion-derived virus envelope protein E27 × 2 (P41702) Protein C42 × 2 (P25695) Uncharacterized 38.0 kDa protein in P143-LEF5 intergenic region × 1 (P24745) Protein AC142 × 1 (P41700) Major capsid protein × 4 (P17499) Capsid-associated protein VP80 × 3 (Q00733) ZINC ION × 4 Consistent with protein count
3 Protein heterocomplex Heteromer Protein 14 Occlusion-derived virus envelope protein E27 × 2 (P41702) Protein C42 × 2 (P25695) Uncharacterized 38.0 kDa protein in P143-LEF5 intergenic region × 1 (P24745) Protein AC142 × 1 (P41700) Major capsid protein × 4 (P17499) Capsid-associated protein VP80 × 3 (Q00733) ZINC ION × 4 Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence
UniProt name AC109_NPVAC
Isoform —
PDB entities 7
Chains and sequence ranges Author chain L; PDBConstruct 1–390; UniProt 1–390

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id9h2b
Deposition date deposition_date2024-10-11
Last revision last_revision2025-06-04
Structure title titleAcMNPV basal cap - C14 anchor complex only
Keywords keywordsnucleocapsid, VIRUS; VIRUS
Experimental Method methodELECTRON MICROSCOPY
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

9h2b__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

9h2b__assembly_1__model_1 | I(q)

10-2 10-1 106 107 108 109 1010 1011 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

9h2b__assembly_1__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg(Guinier)0.00 Å
Rg (electron density)173.30 Å
Total Rg173.30 Å
Atom count416668
Residues50778
Excluded volume7468800 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 9h2b__assembly_1__model_1 196-meric (196) Success 4.1.3-1-20251215 (887e7ef) View Download
2 1 9h2b__assembly_2__model_1 tetradecameric (14) Excluded — —
Exclusion reason: Auxiliary symmetry representation; not a complete or representative biological assembly.
3 1 9h2b__assembly_3__model_1 tetradecameric (14) Excluded — —
Exclusion reason: Auxiliary symmetry representation; not a complete or representative biological assembly.
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (8)

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7. Citations (1)