SAXSdb — 9hge

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1. Protein Identity and Related Structures Protein Identity & Related Structures

Sequestosome-1

Homo sapiens

State in the Current Structure

Assembly	Physical composition	Protein state	Molecular copy count	Associated components	Data consistency
1	Protein homooligomer	Homooligomer	Protein 40	No other associated polymer	Consistent with protein count

Other States of the Same Protein in the Database

View Construct and Data Evidence

UniProt name	SQSTM_HUMAN
Isoform	—
PDB entities	1
Chains and sequence ranges	Author chain A； PDBConstruct 1–104； UniProt 2–105 Author chain B； PDBConstruct 1–104； UniProt 2–105 Author chain C； PDBConstruct 1–104； UniProt 2–105 Author chain D； PDBConstruct 1–104； UniProt 2–105 Author chain E； PDBConstruct 1–104； UniProt 2–105 Author chain F； PDBConstruct 1–104； UniProt 2–105 Author chain G； PDBConstruct 1–104； UniProt 2–105 Author chain H； PDBConstruct 1–104； UniProt 2–105 Author chain I； PDBConstruct 1–104； UniProt 2–105 Author chain J； PDBConstruct 1–104； UniProt 2–105 Author chain K； PDBConstruct 1–104； UniProt 2–105 Author chain L； PDBConstruct 1–104； UniProt 2–105 Author chain M； PDBConstruct 1–104； UniProt 2–105 Author chain N； PDBConstruct 1–104； UniProt 2–105 Author chain O； PDBConstruct 1–104； UniProt 2–105 Author chain P； PDBConstruct 1–104； UniProt 2–105 Author chain Q； PDBConstruct 1–104； UniProt 2–105 Author chain R； PDBConstruct 1–104； UniProt 2–105 Author chain S； PDBConstruct 1–104； UniProt 2–105 Author chain T； PDBConstruct 1–104； UniProt 2–105 Author chain U； PDBConstruct 1–104； UniProt 2–105 Author chain V； PDBConstruct 1–104； UniProt 2–105 Author chain W； PDBConstruct 1–104； UniProt 2–105 Author chain X； PDBConstruct 1–104； UniProt 2–105 Author chain Y； PDBConstruct 1–104； UniProt 2–105 Author chain Z； PDBConstruct 1–104； UniProt 2–105 Author chain a； PDBConstruct 1–104； UniProt 2–105 Author chain b； PDBConstruct 1–104； UniProt 2–105 Author chain c； PDBConstruct 1–104； UniProt 2–105 Author chain d； PDBConstruct 1–104； UniProt 2–105 Author chain e； PDBConstruct 1–104； UniProt 2–105 Author chain f； PDBConstruct 1–104； UniProt 2–105 Author chain g； PDBConstruct 1–104； UniProt 2–105 Author chain h； PDBConstruct 1–104； UniProt 2–105 Author chain i； PDBConstruct 1–104； UniProt 2–105 Author chain j； PDBConstruct 1–104； UniProt 2–105 Author chain k； PDBConstruct 1–104； UniProt 2–105 Author chain l； PDBConstruct 1–104； UniProt 2–105 Author chain m； PDBConstruct 1–104； UniProt 2–105 Author chain n； PDBConstruct 1–104； UniProt 2–105

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id	9hge
Deposition date deposition_date	2024-11-19
Structure title title	PB1 domain of p62/SQSTM1
Keywords keywords	autophagy, filaments, helical reconstruction, PROTEIN FIBRIL; PROTEIN FIBRIL
Experimental Method method	ELECTRON MICROSCOPY

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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

9hge__assembly_1__model_1

Assembly 1 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

9hge__assembly_1__model_1 | I(q)

100 plotted points; both axes use logarithmic scales.

9hge__assembly_1__model_1 | P(r) · Pending

P(r) will be calculated and displayed separately for the same assembly/model.

Rg（Guinier）	84.96 Å
Rg (electron density)	84.39 Å
Total Rg	84.43 Å
Atom count	32320
Residues	4160
Excluded volume	572920 Å³
Maximum q	0.500 Å⁻¹

Assembly	Model	Structure unit	Oligomeric description	Status	CRYSOL	Actions
1	1	`9hge__assembly_1__model_1`	40-meric （40）	Success	4.1.3-1-20251215 (887e7ef)	View Download

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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (1)

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Unit-cell length a length_a	1.000 Å
Unit-cell length b length_b	1.000 Å
Unit-cell length c length_c	1.000 Å
Unit-cell angle α angle_alpha	90.00 °
Unit-cell angle β angle_beta	90.00 °
Unit-cell angle γ angle_gamma	90.00 °
Molecules per unit cell Z z_pdb	—

Space group space_group	P 1
Space-group number int_tables_number	1
Crystal system crystal_system	—

Resolution resolution	4.50 Å
Resolution测定Method resolution_method	—
颗粒数 num_particles	600000

Description description	Sequestosome-1
Molecular weight formula_weight	11553.1 kDa
Source method src_method	man
Copy count entity_count	40

Polymer type type	polypeptide(L)
Chain IDs strand_id	A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z,a,b,c,d,e,f,g,h,i,j,k,l,m,n
Atom count atom_count	32320

PB1 domain of p62/SQSTM1

1. Protein Identity and Related Structures Protein Identity & Related Structures

Sequestosome-1

State in the Current Structure

Other States of the Same Protein in the Database

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

9hge__assembly_1__model_1

9hge__assembly_1__model_1 | I(q)

9hge__assembly_1__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

冷冻电镜 EM 3D

5. Entities and Polymers Entities & Polymers (1)

Entity 1 Entity 1 polymer

Polymer Polymer

Source Source

7. Citations (1)

Source organism organism	Homo sapiens
Common name common_name	human
NCBI taxonomy ID ncbi_taxonomy_id	9606
Host organism host_organism	Escherichia coli BL21(DE3)

PB1 domain of p62/SQSTM1

1. Protein Identity and Related Structures Protein Identity & Related Structures

Sequestosome-1

State in the Current Structure

Other States of the Same Protein in the Database

Monomer

Homodimer

Homotetramer

Other homooligomers

Heteromeric or nucleic-acid complex

2. Structure Basics 2. Structure Basics

3. Official assembly/model SAXS Official SAXS Profiles

9hge__assembly_1__model_1

9hge__assembly_1__model_1 | I(q)

9hge__assembly_1__model_1 | P(r) · Pending

4. Crystallography and Experiment 4. Crystallography & Experiment

Unit cell Unit Cell

Symmetry Symmetry

冷冻电镜 EM 3D

5. Entities and Polymers Entities & Polymers (1)

Entity 1 Entity 1 polymer

Polymer Polymer

Source Source

7. Citations (1)