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9imp

The complex of PDZ3 and PBM

Method: X-RAY DIFFRACTION
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1. Protein Identity and Related Structures Protein Identity & Related Structures

Partitioning defective 3 homolog

Rattus norvegicus

UniProt Q9Z340

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 12 INSC spindle orientation adaptor protein × 6 （D3Z267） water × 10 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 12 INSC spindle orientation adaptor protein × 6 （D3Z267） water × 10 Consistent with protein count
3 Protein heterocomplex Heteromer Protein 12 INSC spindle orientation adaptor protein × 6 （D3Z267） water × 10 Consistent with protein count
4 Protein heterocomplex Heteromer Protein 6 INSC spindle orientation adaptor protein × 3 （D3Z267） water × 4 Consistent with protein count
5 Protein heterocomplex Heteromer Protein 6 INSC spindle orientation adaptor protein × 3 （D3Z267） water × 6 Consistent with protein count

Other States of the Same Protein in the Database

Monomer
2k1z 2ns5 2ogp 3zee 3zee 4i6p 4i6p

7 assemblies

Homodimer
4i6p

1 assemblies

Homotetramer

None

Other homooligomers
3zee

1 assemblies

Heteromeric or nucleic-acid complex
2k20 4dc2 6jue 9imp 9imp 9imp 9imp 9imp

8 assemblies

View Construct and Data Evidence
UniProt name PARD3_RAT
Isoform —
PDB entities 1
Chains and sequence ranges Author chain A； PDBConstruct 7–112； UniProt 580–685 Author chain B； PDBConstruct 7–112； UniProt 580–685 Author chain C； PDBConstruct 7–112； UniProt 580–685 Author chain D； PDBConstruct 7–112； UniProt 580–685 Author chain E； PDBConstruct 7–112； UniProt 580–685 Author chain F； PDBConstruct 7–112； UniProt 580–685

INSC spindle orientation adaptor protein

Mus musculus

UniProt D3Z267

State in the Current Structure

Assembly Physical composition Protein state Molecular copy count Associated components Data consistency
1 Protein heterocomplex Heteromer Protein 12 Partitioning defective 3 homolog × 6 （Q9Z340） water × 10 Consistent with protein count
2 Protein heterocomplex Heteromer Protein 12 Partitioning defective 3 homolog × 6 （Q9Z340） water × 10 Consistent with protein count
3 Protein heterocomplex Heteromer Protein 12 Partitioning defective 3 homolog × 6 （Q9Z340） water × 10 Consistent with protein count
4 Protein heterocomplex Heteromer Protein 6 Partitioning defective 3 homolog × 3 （Q9Z340） water × 4 Consistent with protein count
5 Protein heterocomplex Heteromer Protein 6 Partitioning defective 3 homolog × 3 （Q9Z340） water × 6 Consistent with protein count

Other States of the Same Protein in the Database

Monomer

None

Homodimer

None

Homotetramer

None

Other homooligomers

None

Heteromeric or nucleic-acid complex
9imp 9imp 9imp 9imp 9imp

5 assemblies

View Construct and Data Evidence
UniProt name D3Z267_MOUSE
Isoform —
PDB entities 2
Chains and sequence ranges Author chain G； PDBConstruct 1–10； UniProt 523–532 Author chain H； PDBConstruct 1–10； UniProt 523–532 Author chain I； PDBConstruct 1–10； UniProt 523–532 Author chain J； PDBConstruct 1–10； UniProt 523–532 Author chain K； PDBConstruct 1–10； UniProt 523–532 Author chain L； PDBConstruct 1–10； UniProt 523–532

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

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2. Structure Basics 2. Structure Basics

Entry ID entry_id9imp
Deposition date deposition_date2024-07-04
Structure title titleThe complex of PDZ3 and PBM
Keywords keywordsComplex, protein, PEPTIDE BINDING PROTEIN; PEPTIDE BINDING PROTEIN
Experimental Method methodX-RAY DIFFRACTION
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3. Official assembly/model SAXS Official SAXS Profiles

This page reads only the latest assembly calculations. Every curve maps to an explicit PDB entry, official biological assembly and coordinate model.

9imp__assembly_5__model_1

Assembly 5 · Model 1 · CRYSOL 4.1.3-1-20251215 (887e7ef)

Download this curve (.dat)

9imp__assembly_5__model_1 | I(q)

10-2 10-1 105 106 107 q (1/Angstrom) I(q)
100 plotted points; both axes use logarithmic scales.

9imp__assembly_5__model_1 | P(r) · Pending

The new assembly/model P(r) has not been calculated yet This placeholder does not display legacy data r (Angstrom) P(r)
P(r) will be calculated and displayed separately for the same assembly/model.
Rg（Guinier）20.89 Å
Rg (electron density)19.62 Å
Total Rg20.59 Å
Atom count2248
Residues298
Excluded volume39995 ų
Maximum q0.500 Å⁻¹
Assembly Model Structure unit Oligomeric description Status CRYSOL Actions
1 1 9imp__assembly_1__model_1 dodecameric （12） Success 4.1.3-1-20251215 (887e7ef) View Download
2 1 9imp__assembly_2__model_1 dodecameric （12） Success 4.1.3-1-20251215 (887e7ef) View Download
3 1 9imp__assembly_3__model_1 dodecameric （12） Success 4.1.3-1-20251215 (887e7ef) View Download
4 1 9imp__assembly_4__model_1 hexameric （6） Success 4.1.3-1-20251215 (887e7ef) View Download
5 1 9imp__assembly_5__model_1 hexameric （6） Success 4.1.3-1-20251215 (887e7ef) View Download
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4. Crystallography and Experiment 4. Crystallography & Experiment

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5. Entities and Polymers Entities & Polymers (3)

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7. Citations (1)