9kcf

Bovine Flagellar TRiC

Method: ELECTRON MICROSCOPY Dmax: 190.4 Å Quality: GOOD

1. Protein Identity and Related Structures Protein Identity & Related Structures

Probable T-complex protein 1 subunit zeta-2

OrganismNot specified

UniProt Q3T084

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 16 PDB declaration: hexadecameric(16) Consistent with protein copy count Chain A; UniProt 1–531 Not recorded T-complex protein 1 subunit eta × 2 (Q2NKZ1) T-complex protein 1 subunit alpha × 2 (Q32L40) T-complex protein 1 subunit beta × 2 (Q3ZBH0) T-complex protein 1 subunit gamma × 2 (Q3T0K2) T-complex protein 1 subunit delta × 2 (Q2T9X2) T-complex protein 1 subunit epsilon × 2 (F1MWD3) T-complex protein 1 subunit theta × 2 (Q3ZCI9) T-complex protein 1 subunit zeta × 1 (Q3MHL7) MG MAGNESIUM ION × 6 ADP ADENOSINE-5'-DIPHOSPHATE × 6 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.4 cryo-EM vitrification conditions:Cryogen ETHANE Resolution 3.40 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

No other PDB entry for the same UniProt protein was found.

View Construct and Data Evidence
UniProt name TCPW_BOVIN
Isoform
PDB entities 1
Chains and sequence ranges Author chain A; PDBConstruct 1–531; UniProt 1–531

T-complex protein 1 subunit eta

OrganismNot specified

UniProt Q2NKZ1

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 16 PDB declaration: hexadecameric(16) Consistent with protein copy count Chain F; UniProt 1–543 Chain N; UniProt 1–543 Not recorded Probable T-complex protein 1 subunit zeta-2 × 1 (Q3T084) T-complex protein 1 subunit alpha × 2 (Q32L40) T-complex protein 1 subunit beta × 2 (Q3ZBH0) T-complex protein 1 subunit gamma × 2 (Q3T0K2) T-complex protein 1 subunit delta × 2 (Q2T9X2) T-complex protein 1 subunit epsilon × 2 (F1MWD3) T-complex protein 1 subunit theta × 2 (Q3ZCI9) T-complex protein 1 subunit zeta × 1 (Q3MHL7) MG MAGNESIUM ION × 6 ADP ADENOSINE-5'-DIPHOSPHATE × 6 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.4 cryo-EM vitrification conditions:Cryogen ETHANE Resolution 3.40 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name TCPH_BOVIN
Isoform
PDB entities 2
Chains and sequence ranges Author chain F; PDBConstruct 1–543; UniProt 1–543 Author chain N; PDBConstruct 1–543; UniProt 1–543

T-complex protein 1 subunit alpha

OrganismNot specified

UniProt Q32L40

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 16 PDB declaration: hexadecameric(16) Consistent with protein copy count Chain H; UniProt 1–556 Chain I; UniProt 1–556 Not recorded Probable T-complex protein 1 subunit zeta-2 × 1 (Q3T084) T-complex protein 1 subunit eta × 2 (Q2NKZ1) T-complex protein 1 subunit beta × 2 (Q3ZBH0) T-complex protein 1 subunit gamma × 2 (Q3T0K2) T-complex protein 1 subunit delta × 2 (Q2T9X2) T-complex protein 1 subunit epsilon × 2 (F1MWD3) T-complex protein 1 subunit theta × 2 (Q3ZCI9) T-complex protein 1 subunit zeta × 1 (Q3MHL7) MG MAGNESIUM ION × 6 ADP ADENOSINE-5'-DIPHOSPHATE × 6 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.4 cryo-EM vitrification conditions:Cryogen ETHANE Resolution 3.40 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

2 other PDB entries and 2 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name TCPA_BOVIN
Isoform
PDB entities 3
Chains and sequence ranges Author chain H; PDBConstruct 1–556; UniProt 1–556 Author chain I; PDBConstruct 1–556; UniProt 1–556

T-complex protein 1 subunit beta

OrganismNot specified

UniProt Q3ZBH0

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 16 PDB declaration: hexadecameric(16) Consistent with protein copy count Chain B; UniProt 1–535 Chain J; UniProt 1–535 Not recorded Probable T-complex protein 1 subunit zeta-2 × 1 (Q3T084) T-complex protein 1 subunit eta × 2 (Q2NKZ1) T-complex protein 1 subunit alpha × 2 (Q32L40) T-complex protein 1 subunit gamma × 2 (Q3T0K2) T-complex protein 1 subunit delta × 2 (Q2T9X2) T-complex protein 1 subunit epsilon × 2 (F1MWD3) T-complex protein 1 subunit theta × 2 (Q3ZCI9) T-complex protein 1 subunit zeta × 1 (Q3MHL7) MG MAGNESIUM ION × 6 ADP ADENOSINE-5'-DIPHOSPHATE × 6 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.4 cryo-EM vitrification conditions:Cryogen ETHANE Resolution 3.40 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

8 other PDB entries and 8 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name TCPB_BOVIN
Isoform
PDB entities 4
Chains and sequence ranges Author chain B; PDBConstruct 1–535; UniProt 1–535 Author chain J; PDBConstruct 1–535; UniProt 1–535

T-complex protein 1 subunit gamma

OrganismNot specified

UniProt Q3T0K2

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 16 PDB declaration: hexadecameric(16) Consistent with protein copy count Chain C; UniProt 1–545 Chain K; UniProt 1–545 Not recorded Probable T-complex protein 1 subunit zeta-2 × 1 (Q3T084) T-complex protein 1 subunit eta × 2 (Q2NKZ1) T-complex protein 1 subunit alpha × 2 (Q32L40) T-complex protein 1 subunit beta × 2 (Q3ZBH0) T-complex protein 1 subunit delta × 2 (Q2T9X2) T-complex protein 1 subunit epsilon × 2 (F1MWD3) T-complex protein 1 subunit theta × 2 (Q3ZCI9) T-complex protein 1 subunit zeta × 1 (Q3MHL7) MG MAGNESIUM ION × 6 ADP ADENOSINE-5'-DIPHOSPHATE × 6 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.4 cryo-EM vitrification conditions:Cryogen ETHANE Resolution 3.40 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name TCPG_BOVIN
Isoform
PDB entities 5
Chains and sequence ranges Author chain C; PDBConstruct 1–545; UniProt 1–545 Author chain K; PDBConstruct 1–545; UniProt 1–545

T-complex protein 1 subunit delta

OrganismNot specified

UniProt Q2T9X2

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 16 PDB declaration: hexadecameric(16) Consistent with protein copy count Chain D; UniProt 1–542 Chain L; UniProt 1–542 Not recorded Probable T-complex protein 1 subunit zeta-2 × 1 (Q3T084) T-complex protein 1 subunit eta × 2 (Q2NKZ1) T-complex protein 1 subunit alpha × 2 (Q32L40) T-complex protein 1 subunit beta × 2 (Q3ZBH0) T-complex protein 1 subunit gamma × 2 (Q3T0K2) T-complex protein 1 subunit epsilon × 2 (F1MWD3) T-complex protein 1 subunit theta × 2 (Q3ZCI9) T-complex protein 1 subunit zeta × 1 (Q3MHL7) MG MAGNESIUM ION × 6 ADP ADENOSINE-5'-DIPHOSPHATE × 6 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.4 cryo-EM vitrification conditions:Cryogen ETHANE Resolution 3.40 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

2 other PDB entries and 2 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name TCPD_BOVIN
Isoform
PDB entities 6
Chains and sequence ranges Author chain D; PDBConstruct 1–542; UniProt 1–542 Author chain L; PDBConstruct 1–542; UniProt 1–542

T-complex protein 1 subunit epsilon

OrganismNot specified

UniProt F1MWD3

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 16 PDB declaration: hexadecameric(16) Consistent with protein copy count Chain E; UniProt 1–541 Chain M; UniProt 1–541 Not recorded Probable T-complex protein 1 subunit zeta-2 × 1 (Q3T084) T-complex protein 1 subunit eta × 2 (Q2NKZ1) T-complex protein 1 subunit alpha × 2 (Q32L40) T-complex protein 1 subunit beta × 2 (Q3ZBH0) T-complex protein 1 subunit gamma × 2 (Q3T0K2) T-complex protein 1 subunit delta × 2 (Q2T9X2) T-complex protein 1 subunit theta × 2 (Q3ZCI9) T-complex protein 1 subunit zeta × 1 (Q3MHL7) MG MAGNESIUM ION × 6 ADP ADENOSINE-5'-DIPHOSPHATE × 6 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.4 cryo-EM vitrification conditions:Cryogen ETHANE Resolution 3.40 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

1 other PDB entries and 1 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name F1MWD3_BOVIN
Isoform
PDB entities 7
Chains and sequence ranges Author chain E; PDBConstruct 1–541; UniProt 1–541 Author chain M; PDBConstruct 1–541; UniProt 1–541

T-complex protein 1 subunit theta

OrganismNot specified

UniProt Q3ZCI9

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 16 PDB declaration: hexadecameric(16) Consistent with protein copy count Chain G; UniProt 1–548 Chain O; UniProt 1–548 Not recorded Probable T-complex protein 1 subunit zeta-2 × 1 (Q3T084) T-complex protein 1 subunit eta × 2 (Q2NKZ1) T-complex protein 1 subunit alpha × 2 (Q32L40) T-complex protein 1 subunit beta × 2 (Q3ZBH0) T-complex protein 1 subunit gamma × 2 (Q3T0K2) T-complex protein 1 subunit delta × 2 (Q2T9X2) T-complex protein 1 subunit epsilon × 2 (F1MWD3) T-complex protein 1 subunit zeta × 1 (Q3MHL7) MG MAGNESIUM ION × 6 ADP ADENOSINE-5'-DIPHOSPHATE × 6 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.4 cryo-EM vitrification conditions:Cryogen ETHANE Resolution 3.40 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name TCPQ_BOVIN
Isoform
PDB entities 8
Chains and sequence ranges Author chain G; PDBConstruct 1–548; UniProt 1–548 Author chain O; PDBConstruct 1–548; UniProt 1–548

T-complex protein 1 subunit zeta

OrganismNot specified

UniProt Q3MHL7

State in the Current Structure

Assembly Oligomeric State Construct Mutations and Modifications Ligands, Ions and Associated Components Method and Experimental Conditions Structure Quality
1 Protein heterocomplex Heteromer Protein × 16 PDB declaration: hexadecameric(16) Consistent with protein copy count Chain P; UniProt 1–531 Not recorded Probable T-complex protein 1 subunit zeta-2 × 1 (Q3T084) T-complex protein 1 subunit eta × 2 (Q2NKZ1) T-complex protein 1 subunit alpha × 2 (Q32L40) T-complex protein 1 subunit beta × 2 (Q3ZBH0) T-complex protein 1 subunit gamma × 2 (Q3T0K2) T-complex protein 1 subunit delta × 2 (Q2T9X2) T-complex protein 1 subunit epsilon × 2 (F1MWD3) T-complex protein 1 subunit theta × 2 (Q3ZCI9) MG MAGNESIUM ION × 6 ADP ADENOSINE-5'-DIPHOSPHATE × 6 ELECTRON MICROSCOPY cryo-EM buffer:pH 7.4 cryo-EM vitrification conditions:Cryogen ETHANE Resolution 3.40 Å

Other States of the Same Protein in the Database

Each row is a biological assembly of the same UniProt protein in another PDB entry. The “Difference from current entry” column identifies evidence-level differences; no tag means the currently parsed fields agree.

3 other PDB entries and 3 assemblies. Open the comparison page and filter oligomeric states

View Construct and Data Evidence
UniProt name TCPZ_BOVIN
Isoform
PDB entities 9
Chains and sequence ranges Author chain P; PDBConstruct 1–531; UniProt 1–531

The page prioritizes protein identity, the current assembly, associated components, oligomeric state and cross-PDB links. Chain mapping and sequence ranges are retained as data evidence. Internal IDs, import timestamps and assembly operation expressions are maintenance fields and are not shown here.

SAXS scattering curve SAXS Profile

SAXS profile for 9kcf

P(r) Distance Distribution P(r) Distribution

P(r) distribution for 9kcf
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2. Structure Basics 2. Structure Basics

Entry ID entry_id9kcf
Deposition date deposition_date2024-11-01
Structure title titleBovine Flagellar TRiC
Keywords keywordsTRiC, sperm, flagella, motile cilia, CHAPERONE; CHAPERONE
Experimental Method methodELECTRON MICROSCOPY

3. SAXS Parameters (CRYSOL theoretical calculation) 3. SAXS Parameters (CRYSOL)

Radius of gyration Rg (Guinier) rg_guinier71.90
Radius of gyration Rg (electron density) rg_electron71.20
Forward intensity I(0) i09769950000.00
Molecular weight molecular_weight842580.0 kDa
Excluded volume excluded_volume1058900 ų
Envelope volume envelope_volume2006100 ų
Hydration-shell volume shell_volume225790 ų
Envelope diameter envelope_diameter205.8
Shell Rg shell_rg83.28
Envelope Rg envelope_rg65.68
Shape Rg shape_rg71.22
Total Rg total_rg71.32
Total atoms total_atoms58930
Residues n_residues7701
Spherical-harmonic order n_harmonics20
q range q_range— – 0.5000 −1
Data points n_points101
Shell type shell_typedirectional
Solvent electron density solvent_density0.3340 e/ų
Shell contrast contrast_shell0.0300 e/ų
CRYSOL version crysol_version4.1.3

4. P(r) Distance Distribution (GNOM inversion) 4. P(r) Analysis (GNOM)

Maximum dimension Dmax dmax190.4
Rg (real space) rg_real71.42
Rg uncertainty (real space) rg_real_error0.52
I(0) (real space) i0_real9.7690e+09
I(0) uncertainty (real space) i0_real_error1.5520e+08
Rg (reciprocal space) rg_reciprocal73.49
I(0) (reciprocal space) i0_reciprocal9809000000.0000
Solution quality estimate total_estimate0.8235
Solution quality rating solution_quality GOOD a GOOD solution
P(r) peaks n_peaks1
Primary peak position r_peak_primary112.5
Skewness Skewness skewness-0.219
Kurtosis Kurtosis kurtosis-0.563
Angular range angular_range— – 0.1100 −1
Current regularization parameter α current_alpha0.0023
Highest regularization parameter α highest_alpha3470000000.0000
Real-space data points n_real_points23
GNOM version gnom_version4.1.3
Quality Criteria quality_criteria AN1: 0.000; Oscil: 0.923; Stabil: 1.000; Sysdev: 1.000; Positv: 1.000; Valcen: 0.931; Smooth: 0.000

5. Crystallography and Experiment 5. Crystallography & Experiment

6. Entities and Polymers Entities & Polymers (11)

8. Citations (1)

9. Files and Curves (10)